1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAGATTTATATGGGAATGGACATATGTATGGAGGAGGAAATGTATATGCAAATGGAGATATTTATTATCCAAGACCTATTACTTTTCAAATGGATTTCAGgtatttagatagccaatcatatttagctggcttaatttggtcgatgtgttagtttagtgtccagcagccaaataacttgtcaacaacttgtctgcatag
species | Arabidopsis thaliana |
transcript | AT1G19270.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATGGAGATATTTATTATCCAAGACCTATTACTTTTCAAATGGATTTCAG GATTTGTGCTGGCTGTAATATGGAGATTGGCCATGGAAGATTTCTGAATTGEST: gi|116457268|gb|EG499860.1|EG499860
genomic: AATGGAGATATTTATTATCCAAGACCTATTACTTTTCAAATGGATTTCAGgtatttagat ... gtctgcatagGATTTGTGCTGGCTGTAATATGGAGATTGGCCATGGAAGATTTCTGAATTG
EST: AATGGAGATATTTATTATCCAAGACCTATTACTTTTCAAATGGATTTCAG GATTTGTGCTGGCTGTAATATGGAGATTGGCCATGGAAGATTTCTGAATTGEST: gi|164235893|gb|ES038644.1|ES038644
genomic: AATGGAGATATTTATTATCCAAGACCTATTACTTTTCAAATGGATTTCAGgtatttagat ... gtctgcatagGATTTGTGCTGGCTGTAATATGGAGATTGGCCATGGAAGATTTCTGAATTG
EST: AATGGAGATATTTATTATCCAAGACCTATTACTTTTCAAATGGATTTCAG GATTTGTGCTGGCTGTAATATGGAGATTGGCCEST: gi|116435621|gb|EG478213.1|EG478213
genomic: AATGGAGATATTTATTATCCAAGACCTATTACTTTTCAAATGGATTTCAGgtatttagat ... gtctgcatagGATTTGTGCTGGCTGTAATATGGAGATTGGCC
EST: AATGGAGATATTTATTATCCAAGACCTATTACTTTTCAAATGGATTTCAG GATTTGTGCTGGCTGTAATATGGAGATTGGCCATGGAAGATTTCTGAATTG
genomic: AATGGAGATATTTATTATCCAAGACCTATTACTTTTCAAATGGATTTCAGgtatttagat ... gtctgcatagGATTTGTGCTGGCTGTAATATGGAGATTGGCCATGGAAGATTTCTGAATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATTTATATGGGAATGGACATATGTATGGAGGAGGAAATGTATATGCAAATGGAGATATTTATTATCCAAGACCTATTACTTTTCAAATGGATTTCAGgtatttagatagccaatcatatttagctggcttaatttggtcgatgtgttagtttagtgtccagcagccaaataacttgtcaacaacttgtctgcatag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT