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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATCGCGATAAAGAGTGGATGGGATCAGTTTGGGATTGCATATGGACGACCTTCAACAAACATTCTTATTCGTAATCTCGTTGTTCGCTCTGTTATCAGgtaaagtattttctcatttctcatcttacaccgcaaaactttgaaaacgttttcttttaaagcaaaagaatgaaagtgttctatatgttttgacag

Basic information

species Arabidopsis thaliana
transcript AT1G19170.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G19170.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os02g54030.1 (Oryza sativa), 5'ss of exon 2
CGATCGCGATAAAGAGTGGATGGGATCAGTTTGGGATTGCATATGGACGACCTTCAACAAACATTCTTATTCGTAATCTCGTTGTTCGCTCTGTTATCAGgtaaa-------------------gtattttctcatttctcatcttacaccgcaaaactttgaaaacgttttctt----ttaaa--gcaaaagaatgaaagtgttctatatgttttgacag---------------------------------------------------------------------
| || ||| |||||||||| |||||||| | ||||||||||||||| || || ||    |||||| | || || ||| |  | | ||| ||  |  ||||||||                    | |||   |||| |   || || |   ||| | ||||   ||    | ||     | |||  | |  |||| |||| | ||  ||  |  || ||                                                                       
CCATAGCGGTAAAGAGTGGGTGGGATCAATATGGGATTGCATATGGGCGCCCATCTCGTAACATTGTGATACGCAATGTAATGGCTCGTTCATTGGTCAGgtaacagttgagtcatttttggctgcattgcttcatctaaaatatttctttgcatatctttttcaaatcctgctcaagataaaatggtatgagaaagaaactattaaattaggattaacttttaagttcttttgaattgaatatagagtattacaggtaaggtttacaacagttgtcttggtgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124796032|gb|EH885711.1|EH885711
EST:     AACAAACATTCTTATTCGTAATCTCGTTGTTCGCTCTGTTATCAG                         TGCTGGTGTATCAATCGGAAGCGAAATGTCTGGTGGAATATCTAATGTGAC
genomic: AACAAACATTCTTATTCGTAATCTCGTTGTTCGCTCTGTTATCAGgtaaagtatt ... gttttgacagTGCTGGTGTATCAATCGGAAGCGAAATGTCTGGTGGAATATCTAATGTGAC