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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGTTGGCCACCAGCTGTCAGTTTGAAGATTGCTTTCTTACCATTGTTGGCTTTTGAATTAACAATACTGGTAGACAATTTGAGgtattgatctatgtgtctcgtgaacacacaccaaatgtaaatcatataaatctaaagatcctaatgactgcaagctttatcttcag

Basic information

species Arabidopsis thaliana
transcript AT1G18470.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86039339|gb|DR335094.1|DR335094
EST:     TTCTTACCATTGTTGGCTTTTGAATTAACAATACTGGTAGACAATTTGAG                         AATGTGTCGAGCATTGATGCCAGGAGACGACGACAGCATAACTGATGATG
genomic: TTCTTACCATTGTTGGCTTTTGAATTAACAATACTGGTAGACAATTTGAGgtattgatct ... ttatcttcagAATGTGTCGAGCATTGATGCCAGGAGACGACGACAGCATAACTGATGATG
EST: gi|86039336|gb|DR335091.1|DR335091
EST:     TTCTTACCATTGTTGGCTTTTGAATTAACAATACTGGTAGACAATTTGAG                         AATGTGTCGAGCATTGATGCCAGGAGACGACGACAGCATAACTGATGATGC
genomic: TTCTTACCATTGTTGGCTTTTGAATTAACAATACTGGTAGACAATTTGAGgtattgatct ... ttatcttcagAATGTGTCGAGCATTGATGCCAGGAGACGACGACAGCATAACTGATGATGC
EST: gi|116478068|gb|EG520660.1|EG520660
EST:     TTCTTACCATTGTTGGCTTTTGAATTAACAATACTGGTAGACAATTTGAG                         AATGTGTCGAGCATTGATGCCAGGAGACGACGACAGCATAACTGATGATGC
genomic: TTCTTACCATTGTTGGCTTTTGAATTAACAATACTGGTAGACAATTTGAGgtattgatct ... ttatcttcagAATGTGTCGAGCATTGATGCCAGGAGACGACGACAGCATAACTGATGATGC
EST: gi|125241949|gb|EL256034.1|EL256034
EST:     ACAATACTGGTAGACAATTTGAG                         AATGTGTCGAGCATTGATGCCAGGAGACGACGACAGCATAACTGATGA
genomic: ACAATACTGGTAGACAATTTGAGgtattgatct ... ttatcttcagAATGTGTCGAGCATTGATGCCAGGAGACGACGACAGCATAACTGATGA
EST: gi|86039337|gb|DR335092.1|DR335092
EST:     TTCTTACCATTGTTGGCTTTTGAATTAACAATACTGGTAGACAATTTGAG                         AATGTGTCGAGCATTTGATGCCAGGAGACGACGGACAGCATAACTGATGAT
genomic: TTCTTACCATTGTTGGCTTTTGAATTAACAATACTGGTAGACAATTTGAGgtattgatct ... ttatcttcagAATGTGTCGAGCATT-GATGCCAGGAGACGACG-ACAGCATAACTGATGAT
EST: gi|152035998|gb|AU237167.2|AU237167
EST:     TTCTTACCATTGTTGGCTTTTGAATTAACAATACTGGTAGACAATTTGAG                         AATGTGTCGAGCATTGATGCCAGGAGACGACGACAGCATAACTGATGATGC
genomic: TTCTTACCATTGTTGGCTTTTGAATTAACAATACTGGTAGACAATTTGAGgtattgatct ... ttatcttcagAATGTGTCGAGCATTGATGCCAGGAGACGACGACAGCATAACTGATGATGC