Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAACATTCTAGCTAATGCTGATTGCAAATTGAAGATCTGTGATTTTGGGCTGGCTCGCGTTTCTTTTAACGATGCCCCAACCGCTATATTTTGGACTgtgagtcatctaactcaatgtgaaagcaaaactgttcattaggcttcctcttaactattttcaaatgcttgtgagctcatttcgtttatatggattttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G18150.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G062761_T02 (Zea mays), 5'ss of exon 3
GAAGAACATTCTAGCTAATGCTGATTGCAAATTGAAGATCTGTGATTTTGGGCTGGCTCGCGTTTCTTTTAACGATGCCCCAACCGCTATATTTTGGACTgtgagtcatctaactcaatgtgaaagcaaaactgttcattaggcttcctcttaactattttcaaatgcttgtgagctcatttcgtttatatggattttgtag
 ||||| |||||||| |||||||| |||||  ||||||| ||||||||||| || || |||||||| || || ||  | ||| | || ||||| ||||| || || ||| |   |     |||    ||   ||||  ||   |   |        ||||||  ||| | ||    || |||  | ||              
CAAGAATATTCTAGCCAATGCTGACTGCAAGCTGAAGATTTGTGATTTTGGCCTTGCCCGCGTTTCATTCAATGACACTCCATCAGCCATATTCTGGACGgt-agccattttgatattgttgagcaaaattatgtttgttgaacagtcaagacttgattttcttatgat-gtagaatcttttgctgtag-------------

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 3
GAAGAACATTCTAGCTAATGCTGATTGCAAATTGAAGATCTGTGATTTTGGGCTGGCTCGCGTTTCTTTTAACGATGCCCCAACCGCTATATTTTGGACTgtgagt-catc----taactcaatgtgaaag---caaaactgttcattaggcttcctcttaactattttcaaatgc----ttgtgagct--catttcg--tttatatggattttgtag----------------------------
 || |||||||| ||||| |||||||||||| | || || |||||||||||||| ||||| ||||| ||||| ||||| ||| | |||||||| |||||||||||| || |    |    | ||||  ||     | |  | |  |||| | |    |||   |  |||  | ||     |||  |  |  ||| | |  ||       |   ||| |                            
AAAAAACATTCTTGCTAACGCTGATTGCAAACTAAAAATATGTGATTTTGGGCTTGCTCGAGTTTCATTTAATGATGCTCCATCAGCTATATTCTGGACTgtgagtgcaccattgtgtgaccatgttgaacggttacatttatcaattatgttctgacttttatgcttttgagtgggaaattgcaaattgccatctaggtttctccctaaacctgttgctgacttattttatctactttgaataag

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 3
GAAGAACATTCTAGCTAATGCTGATTGCAAATTGAAGATCTGTGATTTTGGGCTGGCTCGCGTTTCTTTTAACGATGCCCCAACCGCTATATTTTGGACTgtgagtcatctaactcaatgtgaaagcaaaactgtt-cattaggcttcctcttaactattttcaaatgcttgtgagctcattt-----cgtttatatggattttgtag---------------------------------------
 || || ||||| ||||| |||||||||||| | || || |||||||||||||| ||||| ||||| ||||| ||||| ||| | |||||||| ||||||||||||   | |  |   ||   | |   ||||||| ||||   |       |    | ||| ||    ||| | |   | ||          || | | |||                                            
AAAAAATATTCTTGCTAACGCTGATTGCAAACTAAAAATATGTGATTTTGGGCTTGCTCGAGTTTCATTTAATGATGCTCCATCAGCTATATTCTGGACTgtgagtgcacca-ttgtgtgaccatgttgaactgttacatttatcaattatgttctgacttttaagcttttgagtgggaaattgcaaatagccatctaggtttctccctaaacctgttgctgacttattttatctactatgaataag

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA09G30790.1 (Glycine max), 5'ss of exon 3
GAAGAACATTCTAGCTAATGCTGATTGCAAATTGAAGATCTGTGATTTTGGGCTGGCTCGCGTTTCTTTTAACGATGCCCCAACCGCTATATTTTGGACTgtgagtcatctaactcaatgtgaaagcaaaactgttcattaggcttcctcttaactattttcaaatgctt---------gtgagctcatttcgtttatatggattttgtag------------------------------------------------
 || || ||||||||||||||| |||||||| | || || |||||||| || || ||||| ||||| ||||| || |||||| | |||||||| ||||| || |||  |||| |  | ||    |   |   | |   ||  ||||   |||     |||| | ||  |          |||   |||  |  ||||| |   ||    |                                                 
AAAAAATATTCTAGCTAATGCTAATTGCAAACTAAAAATATGTGATTTCGGACTTGCTCGAGTTTCATTTAATGAGGCCCCATCTGCTATATTCTGGACCgtaagtattctagcaaattgatgcacttattatttctgttttgcttttgcttctgccttttaagattttctgctggaaagtgcaatcaaattctttatttctgttccagaatcattcttctaaacattttgctgactgattttacctgctcttactaag

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA07G11470.1 (Glycine max), 5'ss of exon 3
GAAGAACATTCTAGCTAATGCTGATTGCAAATTGAAGATCTGTGATTTTGGGCTGGCTCGCGTTTCTTTTAACGATGCCCCAACCGCTATATTTTGGACTgtgagtcatctaactcaatgtgaaagcaaaactgttcattaggcttcctcttaactattttcaaatgcttgtgagctcatttcgtttatatggattttgtag-----------------------------------------------------------
 || || |||||||||||||||||||||||  | ||  | ||||||||||| || ||||| ||||| ||||| || | |||| | |||||||| |||||||| |||  |||| |  | ||    |   |     |   ||  |||||  |||   | |||| | ||  ||    |   | | |  | | ||  ||| | |                                                             
AAAAAATATTCTAGCTAATGCTGATTGCAAGCTAAAATTATGTGATTTTGGACTTGCTCGAGTTTCATTTAATGAGGACCCATCAGCTATATTCTGGACTgtaagtattctagcaaattgatgcacttattagttctgttttgcttctgcttttgtcttttaagatttttagctggaaagtgcaatcaaattcattatttctgttccagaatcatccttctaaatattttgctgactgattttatctactctcttactaag

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0011g04920.t01 (Vitis vinifera), 5'ss of exon 3
GAAGAACATTCTAGCTAATGCTGATTGCAAATTGAAGATCTGTGATTTTGGGCTGGCTCGCGTTTCTTTTAACGATGCCCCAACCGCTATATTTTGGACTgtgagtcatctaactcaatgtgaaagcaaaactgttcattaggcttcctcttaactattttcaaatgcttgtgagctcatttcgtttatatggattttgtag
 || ||||| || |||||||| || |||||| ||||||| |||||||||||||| |||||||| || ||||| ||| ||||| |  |||| |||||||||||   | |||||  |   | || ||  |||     | || ||  ||  | |||    |||| | | |    ||||    |     |||| |  |||||| ||
AAAAAACATCCTTGCTAATGCAGACTGCAAACTGAAGATTTGTGATTTTGGGCTTGCTCGCGTGTCATTTAATGATACCCCATCAACTATCTTTTGGACTgtatat-atctattt---tttgcaatgaaa-----ttatgagctttagtgtta----ttttaacagg---atgagtctgt--aacttatctacattttgaag

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 3
GAAGAACATTCTAGCTAATGCTGATTGCAAATTGAAGATCTGTGATTTTGGGCTGGCTCGCGTTTCTTTTAACGATGCCCCAACCGCTATATTTTGGACTgtgagtcatctaactcaatgtgaaagcaaaactgttcattaggcttcctcttaactattttcaaatgcttgtgagctcatttcgtttatatggattttgtag---------------------------------------------------
 || || ||||| |||||||| || ||||| |||||||| |||||||||||||| ||||| || || || || ||||| ||| | ||||| || ||||| ||  ||  |||  |  ||   | |  |   ||  ||   |    |||  | || |       |||      |   ||| |||  |||||    | |||  |                                                    
AAAAAATATTCTTGCTAATGCCGACTGCAAGTTGAAGATTTGTGATTTTGGGCTTGCTCGGGTGTCATTCAATGATGCACCATCAGCTATTTTCTGGACAgtatgtagtcttgccaaa---gtactcctgac-atttgctgcatttctgcata-cggccgagaaaattacttagtctcttttattttatg-atactttaaaatttttgaaagctagaaactttaactaatcatatttatttactttttcaaag