1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTTgtaagttaatggacatgattattagcctttgggcattttagcatgaacaagatactctgttttccaagttttggattacattgtttactctaatgtgcag
species | Arabidopsis thaliana |
transcript | AT1G17370.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTT GTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGAEST: gi|116386087|gb|EG428679.1|EG428679
genomic: GATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTTgtaagttaat ... taatgtgcagGTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGA
EST: GATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTT GTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGAEST: gi|116486731|gb|EG529323.1|EG529323
genomic: GATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTTgtaagttaat ... taatgtgcagGTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGA
EST: GATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTT GTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGAEST: gi|125050686|gb|EL122955.1|EL122955
genomic: GATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTTgtaagttaat ... taatgtgcagGTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGA
EST: GATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTT GTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGEST: gi|116486728|gb|EG529320.1|EG529320
genomic: GATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTTgtaagttaat ... taatgtgcagGTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGG
EST: GATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTT GTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGAEST: gi|124883815|gb|EH962717.1|EH962717
genomic: GATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTTgtaagttaat ... taatgtgcagGTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGA
EST: TGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTT GTTTGGGCAACCTATCAAGEST: gi|116386137|gb|EG428729.1|EG428729
genomic: TGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTTgtaagttaat ... taatgtgcagGTTTGGGCAACCTATCAAG
EST: GATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTT GTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGAEST: gi|116477129|gb|EG519721.1|EG519721
genomic: GATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTTgtaagttaat ... taatgtgcagGTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGA
EST: GATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTT GTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGAEST: gi|125049684|gb|EL121953.1|EL121953
genomic: GATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTTgtaagttaat ... taatgtgcagGTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGGCCAGAGGGA
EST: AATGGAAGGCATTT GTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGG
genomic: AATGGAAGGCATTTgtaagttaat ... taatgtgcagGTTTGGGCAACCTATCAAGGTTAACTGGGCTTATGCGAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCTTATGGGTTTGTGCACTACTTTGATCGAAGATCGGCTGGTCTTGCAATCCTTTCTCTCAATGGAAGGCATTTgtaagttaatggacatgattattagcctttgggcattttagcatgaacaagatactctgttttccaagttttggattacattgtttactctaatgtgcag
- - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG