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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGGGTTGCCTCTGGTTTTCAAGTCAAGTTTCGATAAAGCTAACAGAACTTCATCAAAGTCCTTCCGAGGTCCTGGCATGGCTGAGGGGCTCAAGgtaaatcattccctcttctttgagttgcaagcatggatgactctttatctggtgctcttagaactgcgcatttgaaaaccttcaggagtatattgatgtc...

Basic information

species Arabidopsis thaliana
transcript AT1G16340.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G16340.4 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G48370.1 (Glycine max), 5'ss of exon 3
GCTTGGGTTGCCTCTGGTTTTCAAGTCAAGTTTCGATAAAGCTAACAGAACTTCATCAAAGTCCTTCCGAGGTCCTGGCATGGCTGAGGGGCTCAAGgtaaatcattccctcttctttgagttgcaagcatggatgactctttatctggtgctcttagaactgcgcat-ttgaaaaccttcaggagtatat--tgatgtc---
  ||||  | ||  |||||||||||||||| || || ||||||||| |||| |||||||| || || || || || || |||||||||||  | |||||  || ||| |  || |  ||  |||| |  ||  ||  |  | |   | ||      ||   |     | ||| ||   ||||  |  ||    |||||     
-GTTGGAATACCATTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGCTGAGGGATTGAAGGttcat-atttctgctaccatg--ttgcgataat--atctccttgtgatttgtatctagagggttctaggtgttgtaattgttcaataacatgagatgatgagact

upper sequence: AT1G16340.4 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G38010.1 (Glycine max), 5'ss of exon 4
GCTTGGGTTGCCTCTGGTTTTCAAGTCAAGTTTCGATAAAGCTAACAGAACTTCATCAAAGTCCTTCCGAGGTCCTGGCATGGCTGAGGGGCTCAAGgtaaatcattccctcttctttgagttgcaagcatggatgactctttatctggtgctcttagaactgcgcat-ttgaaaaccttcaggagtatattgatgtc----
  ||||  | ||  |||||||||||||||| || || ||||||||| |||| |||||||| || || || || || || |||| ||||||  | |||||  || ||| |  || |||||  |||| |  ||  ||  |  | |   | ||    | || | |     | ||| ||   ||||  |  ||     |||     
AGTTGGAATACCGTTGGTTTTCAAGTCAAGCTTTGACAAAGCTAACCGAACATCATCAAAATCATTTCGTGGCCCGGGGATGGTTGAGGGATTGAAGgttcat-atttctgctactttg--ttgcgataat--atctccttgtgatttgtatcttgaggattctaggtgttgtaattgttcaataagatgagactgtattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068066|gb|DR363823.1|DR363823
EST:     GAAATTCATCAAAGTCCTTCCGAGGTCCTGGCATGGCTGAGGGGCTCAAG                         ATTCTTGAGAAGGTGAAAGTAGCATTTGATCTACCAATCGTTACTGACGTT
genomic: GAACTTCATCAAAGTCCTTCCGAGGTCCTGGCATGGCTGAGGGGCTCAAGgtaaatcatt ... ctctcgacagATTCTTGAGAAGGTGAAAGTAGCATTTGATCTACCAATCGTTACTGACGTT