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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAACATGCTCGTTTGCATCTAGATGAGGTCAAACCTGAAGGCTATGTCAATGAGGCGGTTGAACAAATAGCTTACGCGGATCGTATCATTGTTAACAAGgtattgtgaagttctatttcgacctaattttcatgattaacatcaccataacttgtatttgaaatgtgtggtggatgcttatagtagaagcttttcaatggtctgctatgtatgttctcctcgacatatcatacaagctgaaaattgtttgtactttgttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G15730.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474224|gb|EG516816.1|EG516816
EST:     ATGAGGCGGTTGAACAAATAGCTTACGCGGATCGTATCATTGTTAACAAG                         ACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAG
genomic: ATGAGGCGGTTGAACAAATAGCTTACGCGGATCGTATCATTGTTAACAAGgtattgtgaa ... tttgttgtagACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAG
EST: gi|116474225|gb|EG516817.1|EG516817
EST:     ATGAGGCGGTTGAACAAATAGCTTACGCGGATCGTATCATTGTTAACAAG                         ACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAG
genomic: ATGAGGCGGTTGAACAAATAGCTTACGCGGATCGTATCATTGTTAACAAGgtattgtgaa ... tttgttgtagACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAG
EST: gi|164041492|gb|ES212142.1|ES212142
EST:     GTAGGCGGTTGAACAAATAGCTTACGCGGATCGTATACATTGTTAACAAG                         ACTGATCTTGTTGGTGAGCCAGAAC
genomic: G-AGGCGGTTGAACAAATAGCTTACGCGGATCGTAT-CATTGTTAACAAGgtattgtgaa ... tttgttgtagACTGATCTTGTTGGTGAGCCAGAAC