1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGCAGATGATGAAGTTGTTGATCCAAAGAAGTACCTTGAGGAATCTTGCAAACCAAAATGTGTGAAGCCACTTCTCGAATATCAGgtgaaactggttgatgttgtgactaattatgaattgtgttataagttttgacacagtgccatgttttgtgaagatcattgtttgactgatacaaggcttgtttgtggttctcag
species | Arabidopsis thaliana |
transcript | AT1G15120.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGAGGAATCTTGCAAACCAAAATGTGTGAAGCCACTTCTCGAATATCAG GCATGTGTCAAGAGAATCCAAGGTGATGATTCTGGCCAEST: gi|164080371|gb|ES075323.1|ES075323
genomic: TTGAGGAATCTTGCAAACCAAAATGTGTGAAGCCACTTCTCGAATATCAGgtgaaactgg ... tggttctcagGCATGTGTCAAGAGAATCCAAGGTGATGATTCTGGCCA
EST: TTGAGGAATCTTGCAAACCAAAATGTGTGAAGCCACTTCTCGAATATCAG GCATGTGTCAAGAGAATCCAAAGTGATGATEST: gi|164216671|gb|ES089623.1|ES089623
genomic: TTGAGGAATCTTGCAAACCAAAATGTGTGAAGCCACTTCTCGAATATCAGgtgaaactgg ... tggttctcagGCATGTGTCAAGAGAATCCAAGGTGATGAT
EST: TTGAGGAATCTTGCAAACCAAAATGTGTGAAGCCACTTCTCGAATATCAG GCATGTGTCAAGAGAATCCAAAGTGATGATTEST: gi|124923746|gb|EL001905.1|EL001905
genomic: TTGAGGAATCTTGCAAACCAAAATGTGTGAAGCCACTTCTCGAATATCAGgtgaaactgg ... tggttctcagGCATGTGTCAAGAGAATCCAAGGTGATGATT
EST: ATGTGTGAAGCCACTTCTCGAATATCAG GCATGTGTCAAGAGAATCCAAGGTGATGATTCTGGCCACAAGCATTGCACT
genomic: ATGTGTGAAGCCACTTCTCGAATATCAGgtgaaactgg ... tggttctcagGCATGTGTCAAGAGAATCCAAGGTGATGATTCTGGCCACAAGCATTGCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAGATGATGAAGTTGTTGATCCAAAGAAGTACCTTGAGGAATCTTGCAAACCAAAATGTGTGAAGCCACTTCTCGAATATCAGgtgaaactggttgatgttgtgactaattatgaattgtgttataagttttgacacagtgccatgttttgtgaagatcattgtttgactgatacaaggcttgtttgtggttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC