Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGgtaaaccttgattctgtatatattttcaatttagtttttcctgcattgttgttgatatttactctatcttggcag

Basic information

species Arabidopsis thaliana
transcript AT1G14530.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G14530.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G174286_T03 (Zea mays), 5'ss of exon 5
ATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGgtaaacc---ttgattctg-tatatattttca--atttagtttttcctgcattg-ttgttgatatttactctatcttggcag
||  | || ||| |  | || ||||| ||  | ||||| |||||||| |||||||| ||||| || ||||| |||||||||||||| || ||||||   |   |||  |||| || |  | |  |   ||| |||  |  ||    | || || || |||  ||    |  | ||
ATAATACAGCATGTGCTTCTAGATATGCCTGGGCTTGCATTCTTCACAACATATGCACTTCTAGTGCTCTTCTGGGCAGAGATTTATTATCAGgtacctcgttttgtctctgatagacctctctattgttttgttaatgttgttgcgcttcttaatttttgttcatgttctgtag

upper sequence: AT1G14530.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G09640.1 (Glycine max), 5'ss of exon 4
ATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGgtaaaccttgattctgta-tatattttcaatt--tagtttttcctgcattgttgttgatatttactctatcttggcag------------------------------------------
||| | ||||||||||||||||| || || |||||||||||||| || || ||||||||  |||| || || ||||| |||||||| ||||||| ||   || |||||||  ||||| | || ||  || ||||   |  | ||    ||  || |   |||| ||||  |                                          
ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCGCTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaag--ttcattctgtggtatatgtacatttactatttttctttttaatgagtatgggatat-tgctattttggtggcctgattatgagtttatgactttgatgctacatgttttgcag

upper sequence: AT1G14530.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G26630.2 (Glycine max), 5'ss of exon 4
ATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGgtaaaccttgattctgtatatattttcaatttagtttttcctgcattgttgttgatatttactctatcttggcag---------------------------------------
||| | ||||||||||||||||| || || |||||||||||||| || || ||||| ||  |||| || || ||||| |||||||| ||||||| ||   |  ||||    |  ||||| | | |  || ||  |   | | |   ||| ||    |||| ||||  |                                       
ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagt-tgaattcgtggtgcatttttactgtttttctttttaattagcttgggatgttg---ctattttggtggcctgattatgactttgatgctacgttacctgtttggcag

upper sequence: AT1G14530.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G01360.1 (Glycine max), 5'ss of exon 4
ATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGgtaaaccttgattctgtatatattttcaatttagtttttcctgcattgttgttgatatttactctatcttggcag-------------------------------------------------------------
||| | ||||| ||||| |||||  | || |||||||||||||| || |||||||| ||| |||| || || ||||| |||||||| ||||||| ||   ||||||     |  |||| |   |   |  ||  |          |||| |||  | |  | ||||||                                                             
ATTGTTCAACACATCTTGCTTGACGTGCCGAGTCTTGCTTTCTTTACAACATATGCACTTTTGGTCCTGTTCTGGGCTGAGATTTATTACCAGgcaagt-ttgatttgtggtgcatttgcttctacatggttggtttgcctcctgtgat-tttcttattccatggcagtgtgttttgctgattggttttgatgggctgattactgcctcggtgttaaatgcttttgcag

upper sequence: AT1G14530.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0010g01740.t01 (Vitis vinifera), 5'ss of exon 4
ATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGgtaaaccttgattctgtatatattttcaatttagtttttcctgcattgttgttgatat-ttactctatcttggcag--------
||| | |||||||||||||||||||| |||||||||||||||||||| || ||||| ||| ||||  | || |||||||| || ||||| ||||| |  | | | |   |||   | ||    ||   | |   || |||||| ||  |   |  |  ||| ||  ||         
ATTATCCAACATATCTTACTTGATATGCCAAGTCTTGCTTTCTTCACAACCTATGCTCTTTTGGTATTGTTCTGGGCAGAAATATACTATCAGgttaggcataact---tatgggtcttactcttttgtatgtttgtattgttattagttcgtctcattattttctcaacatgacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116477218|gb|EG519810.1|EG519810
EST:     TCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAG                         GCACGTGCTGTATCGACTGATGGACTGAGGCCAAGTTTCTTCACAATTAAT
genomic: TCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGgtaaaccttg ... atcttggcagGCACGTGCTGTATCGACTGATGGACTGAGGCCAAGTTTCTTCACAATTAAT
EST: gi|116477220|gb|EG519812.1|EG519812
EST:     TCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAG                         GCACGTGCTGTATCGACTGATGGACTGAGGCCAAGTTTCTTCACAATTAAT
genomic: TCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGgtaaaccttg ... atcttggcagGCACGTGCTGTATCGACTGATGGACTGAGGCCAAGTTTCTTCACAATTAAT
EST: gi|86039847|gb|DR335602.1|DR335602
EST:     TCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAG                         GCACGTGCTGTATCGACTGATGGACTGAGGCCAAGTTTCTTCACAATTAAT
genomic: TCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAGgtaaaccttg ... atcttggcagGCACGTGCTGTATCGACTGATGGACTGAGGCCAAGTTTCTTCACAATTAAT