Sequence
atgc intronic sequence ATGC exonic sequenceTTGGACGAACCTCAGATCGAGCATCTGCTTCAGACAGCTGAAGCCATCAGAAAAGATTACCCTGATGAAGACTGGCTCCATCTGACCGGTCTTATCCACGgtaaattatactccctgattcggtttgatcacgttaaaatatcgtttaccggtttaatgattttgtgtttggtgtgtatgtgaatcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G14520.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G14520.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G126900_T01 (Zea mays), 5'ss of exon 2
TTGGACGAACCTCAGATCGAGCATCTGCTTCAGACAGCTGAAGCCATCAGAAAAGATTACCCTGATGAAGACTGGCTCCATCTGACCGGTCTTATCCACGgtaaa--ttatactccctgatt--cggtttgatcacgtta-aaatatcgtttaccggtttaatgattttgtgtttggtgtgtatgtgaatcag
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CTGGACATGCCCCAGATCGAGCACCTGCTGCAGACCGCCGAGGCCATCCGCAAGGACTACCCCGACGAGGACTGGCTCCACCTCACCGGACTCATCCACGgtatggcctgcactgcttgcttgcttgcttactgccgatgcaactgtcgtcgccacgcttctctaatcta-actcactgtcattttcag----
upper sequence: AT1G14520.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv09s0002g02940.t01 (Vitis vinifera), 5'ss of exon 4
TTGGACGAACCTCAGATCGAGCATCTGCTTCAGACAGCTGAAGCCATCAGAAAAGATTACCCTGATGAAGACTGGCTCCATCTGACCGGTCTTATCCACGgtaaattatactccctgattcggtttgatcacgttaa-aatatcgtttaccggtttaatgattttgtgtttggtgtgtatgtgaatcag-------------
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TTGGATGAGCCTCAGATCGAGCACTTGCTGCAGACAGCTGAGGCCATCCGAAAAGACTATCCTAACGAGGATTGGATGCACCTCACTGCTCTTATCCATGgtaaattct-ctgcttcatctccttaaatcctatgaatagtattaggtagaggccagaggacct-gtgtaaggaacactcccaacctcattgatattgtacgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19878336|gb|AU239167.1|AU239167EST: AAAAGATTACCCTGATGAAGACTGGCTCCATCTGACCGGTCTTATCCACG ATCTTGGAAAAGTTCTTCTTCACTCTTCATTTGGTGAGCTCCCTCAGTGGG
genomic: AAAAGATTACCCTGATGAAGACTGGCTCCATCTGACCGGTCTTATCCACGgtaaattata ... tgtgaatcagATCTTGGAAAAGTTCTTCTTCACTCTTCATTTGGTGAGCTCCCTCAGTGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGACGAACCTCAGATCGAGCATCTGCTTCAGACAGCTGAAGCCATCAGAAAAGATTACCCTGATGAAGACTGGCTCCATCTGACCGGTCTTATCCACGgtaaattatactccctgattcggtttgatcacgttaaaatatcgtttaccggtttaatgattttgtgtttggtgtgtatgtgaatcag
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