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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCCCAACCATTTTCGAGGTTGTAACTGGCAATGCAAAGCAATCCAAGGATCAATCTGCTAACCACAACAGTAGCAGAAGCAAATCTAGTGGTGGCAAGgtagaagcttctgttttctcttttttttcgccctctcagtccatgtatctgtgttgggttcttatctctacttactcctttgttttctaatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G14510.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125102332|gb|EL157125.1|EL157125
EST:     ATCAATCTGCTAACCACAACAGTAGCAGAAGCAAATCTAGTGGTGGCAAG                         CCTCGTCACTTCTGAATCTCACACTAAGG
genomic: ATCAATCTGCTAACCACAACAGTAGCAGAAGCAAATCTAGTGGTGGCAAGgtagaagctt ... tctaatgcagCCTCGTCA-TTCTGAATCTCACACTAAGG
EST: gi|86050931|gb|DR346686.1|DR346686
EST:     AAATCTAGTGGTGGCAAG                         CCTCGTCATTCTGAATCTCACACTAAGGCTTCAAAGATGTCCCCTCCACCA
genomic: AAATCTAGTGGTGGCAAGgtagaagctt ... tctaatgcagCCTCGTCATTCTGAATCTCACACTAAGGCTTCAAAGATGTCCCCTCCACCA
EST: gi|86050932|gb|DR346687.1|DR346687
EST:     AAATCTAGTGGTGGCAAG                         CCTCGTCATTCTGAATCTCACACTAAGGCTTCAAAGATGTCCCCTCCACCA
genomic: AAATCTAGTGGTGGCAAGgtagaagctt ... tctaatgcagCCTCGTCATTCTGAATCTCACACTAAGGCTTCAAAGATGTCCCCTCCACCA
EST: gi|86050923|gb|DR346678.1|DR346678
EST:     AAATCTAGTGGTGGCAAG                         CCTCGTCATTCTGAATCTCACACTAAGGCTTCAAAGATGTCCCCTCCACCA
genomic: AAATCTAGTGGTGGCAAGgtagaagctt ... tctaatgcagCCTCGTCATTCTGAATCTCACACTAAGGCTTCAAAGATGTCCCCTCCACCA
EST: gi|124785853|gb|EH875532.1|EH875532
EST:     TAGCAGAAGCAAATCTAGTGGTGGCAAG                         CCTCGTCATTCTGAATCTCACACTAAGGCTTCAAAGATGTCCCCTCCACCA
genomic: TAGCAGAAGCAAATCTAGTGGTGGCAAGgtagaagctt ... tctaatgcagCCTCGTCATTCTGAATCTCACACTAAGGCTTCAAAGATGTCCCCTCCACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTCCCAACCATTTTCGAGGTTGTAACTGGCAATGCAAAGCAATCCAAGGATCAATCTGCTAACCACAACAGTAGCAGAAGCAAATCTAGTGGTGGCAAGgtagaagcttctgttttctcttttttttcgccctctcagtccatgtatctgtgttgggttcttatctctacttactcctttgttttctaatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG