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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTCATGTATATGGGGAATTGTGAAGTTTCAGGCTCTTGTTCGTGGCCAGAAAGCTAGATCTTCAGATATTGCGATTCAGTTTCAGAAAAAACATATGgtagagactctttatcacgccttcattacatagttggctgattttgtaggcttgttataatcaagctgcaattttctttcttctattag

Basic information

species Arabidopsis thaliana
transcript AT1G14380.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G14380.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: AC207628.4_FGT011 (Zea mays), 5'ss of exon 3
ATATTCATGTATATGGGGAATTGTGAAGTTTCAGGCTCTTGTTCGTGGCCAGAAAGCTAGATCTTCAGATATTGCGATTCAGTT---------------TCAGAAAAAACATATGgtagagactctttatcacgccttcattacatagttggctgattttgtaggcttgtt-ataatcaagctgcaattttctttcttctattag-----------------------------------------
               |   |||||||||||||||||||| ||||||||    || | ||||   || |  | |   || ||| |               |||||  ||   |  |||| ||  ||||| |    |   ||||      |||  ||  |   ||  ||| ||   | |||   ||   |||     ||    || |                                         
---------------GTTGATTGTGAAGTTTCAGGCTCTAGTTCGTGGAAGAAATGTTAGACTCTCTGGCAGTCGCATGCAGCTCAATGTGAAGTTTGGTCAGAGTAACTTTGGGgta-agtttctttgttgaccacacatttatgttttgtttgcatccttactcttctttgaagtcagtgtgatgtttgtcgcctatggttcgatgcaacattgctgagaaaatgtggtgcttgtacttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164183459|gb|ES129949.1|ES129949
EST:     NGAAAGCTAGATCTTCAGATATTGCGATTCAGTTTCAGAAAAAACATATG                         GAAGCAAGTGATTCAGAAGTTTTGCAATCG
genomic: AGAAAGCTAGATCTTCAGATATTGCGATTCAGTTTCAGAAAAAACATATGgtagagactc ... cttctattagGAAGCAAGTGATTCAGAAGTTTTGCAATCG