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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTGAAAGAATCGCAAGCTTTTCGTTCATTCTTTTCGTTTTGTCTTGGATCATTCTCCGCCTCATTTACTATCCCTTTTGGATCCTATGGAGTACAAGgtttgtataatatattaagatcctttctatagtttttctcgaaatatttgtcgccttacatatattacattgcttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G13580.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13580.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G12080.1 (Glycine max), 5'ss of exon 4
GAGCTGAAAGAATCGCAAGCTTTTCGTTCATTCTTTTCGTTTTGTCTTGGATCATTCTCCGCCTCATTTACTATCCCTTTTGGATCCTATGGAGTACAAGgtttgtataatatattaagatcctttctatagtttttctc---------gaaatattt----gtcgccttacatatattacattgcttgttgcag-------
| ||||||| ||| || |||||| | || ||||| || ||||| |||||||||||  | |||||||||||||| || || ||||| || ||||||||||||||| |||  ||| ||     ||  | || | | ||| ||         |  ||||||    |||  |     | |||||  | |||| ||  |        
GTGCTGAAACAATGGCTAGCTTTGCTTTTATTCTATTTGTTTTATCTTGGATCATATTGCGCCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAGgtttatat--tattttggttcccaatttacattatttttccttctcgctgttatattttatggtcctcacctgtctattatgtggcttcttaaaatctaggt

upper sequence: AT1G13580.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G36370.1 (Glycine max), 5'ss of exon 4
GAGCTGAAAGAATCGCAAGCTTTTCGTTCATTCTTTTCGTTTTGTCTTGGATCATTCTCCGCCTCATTTACTATCCCTTTTGGATCCTATGGAGTACAAGgtttgtata-atatattaagatcctttctatagtttttctc------gaaatatttgtcgccttaca----tatattacattgcttgttgcag-------
| |||||||  || || |||||| | || ||||| || ||||| |||||||||||  | || ||||||||||| || || ||||| || ||||||||||||||| |||   | |  |       || |  || |||| ||       |  ||||||   | | | ||    | |||||  | |||| ||  |        
GTGCTGAAACTATGGCTAGCTTTGCTTTTATTCTATTTGTTTTATCTTGGATCATATTGCGTCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAGgtttatatttgtttgcttcccaatttacattatttttccttctcgctgttatattttatggccttcacctgtctattatgtggcttcttaaaatctaggc

upper sequence: AT1G13580.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0010g01110.t01 (Vitis vinifera), 5'ss of exon 4
GAGCTGAAAGAATCGCAAGCTTTTCGTTCATTCTTTTCGTTTTGTCTTGGATCATTCTCCGCCTCATTTACTATCCCTTTTGGATCCTATGGAGTACAAGgtttgtataatatattaagatcctttctatagtttttctcgaaatatttgtcgccttacatatattacatt-gcttgttgcag-----------------
| |||||||  |  |||||| | || ||||||||||| ||||||||||||||| | || ||||| ||||||||||| || ||||||||  |||| |||||||  | ||||  |  |        ||   | ||| || |    ||      | ||||   | || || ||| |  | |||||                  
GTGCTGAAACCACTGCAAGCATCTCTTTCATTCTTTTTGTTTTGTCTTGGATCGTACTTCGCCTAATTTACTATCCATTCTGGATCCTTCGGAGCACAAGgtgagaataagttggtgcatagtgtttattggttattatgctcattagacaccccttttctctaatatattcgtattttgcaaaggttttaacttttgat