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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATTCACCTCAGTTGGATTCTCCTCCTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGgtttgcgtctctctttttcttcaaaagtttaactttctgttatatgtgctggtgaaggtgttttgaagtcttttttatcttacaccttttgagcttttattag

Basic information

species Arabidopsis thaliana
transcript AT1G13560.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13560.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0010g00950.t01 (Vitis vinifera), 5'ss of exon 5
ATATATTCACCTCAGTTGGATTCTCCTCCTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGgtttgcgtctctctttttcttcaaaagtttaactttctgttatatgtgctggtg--aaggtgttttgaagtcttttttatcttaca--ccttttgagcttttattag
|||||||| ||||  ||||||||  |||| ||| ||||||| ||||| || |||||||||||||| ||||| || ||||||||    |||   |||  |||    | ||  | ||||||  || | ||| |   |   | |||| | || |||  | | || ||  |||    | |    |    
ATATATTCTCCTCGTTTGGATTCAGCTCCACCAAGATGGGTGCACTTTGCTCATGGTTTACTTCTTTTCTTATACCAGgtttg----tctaaattttgtcagtt-tctacttgtctgttccattttctgtttctatcatattttcatgtatttgctcttttgcatgcctgccaaacacacaca--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86070080|gb|DR365837.1|DR365837
EST:     CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAG                         ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
genomic: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGgtttgcgtct ... cttttattagACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
EST: gi|163974523|gb|EL987272.1|EL987272
EST:     CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAG                         ACATTTGATGCGGTTGATGGG
genomic: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGgtttgcgtct ... cttttattagACATTTGATGCGGTTGATGGG
EST: gi|86070077|gb|DR365834.1|DR365834
EST:     CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAG                         ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
genomic: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGgtttgcgtct ... cttttattagACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
EST: gi|86070082|gb|DR365839.1|DR365839
EST:     CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAG                         ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
genomic: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGgtttgcgtct ... cttttattagACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
EST: gi|86070078|gb|DR365835.1|DR365835
EST:     CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAG                         ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
genomic: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGgtttgcgtct ... cttttattagACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
EST: gi|86070081|gb|DR365838.1|DR365838
EST:     ATGGTTTACTTCTCTTCTTGTATCAG                         ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
genomic: ATGGTTTACTTCTCTTCTTGTATCAGgtttgcgtct ... cttttattagACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC