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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGAGCGTGAAGAAGAATGCGGTATCTGTTTAGAAACTTGCACCAAAATGGTGTTGCCTAATTGTTGCCATTCTATGTGCATCAAATGCTATCGCAATTGgtatatacacacacacactttttagtttttagacctttttgacctgatgcatttactgaatctcgttgattctcaaatctgcag

Basic information

species Arabidopsis thaliana
transcript AT1G13195.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13195.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G10630.1 (Glycine max), 5'ss of exon 4
TAGAGCGTGAAGAAGAATGCGGTATCTGTTTAGAAACTTGCACCAAAATGGTGTTGCCTAATTGTTGCCATTCTATGTGCATCAAATGCTATCGCAATTGgtatatacacacac-acactttttagtttttagacctttttgacctgatgcatttactgaatctcgttgattctcaaatctgcag---------------
| ||  | ||||| ||||| || || || |||||  |||||||||||||||| ||||||||||| || ||| | ||||| ||||||||||| ||||| |||||| ||  || |  | || |     |||     ||||  |          |||   | |   || ||  || |   | |    |               
TGGAAAGAGAAGATGAATGTGGCATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattcatattagacatgcatatttagtcgccttactttatattcaaattggtttatcatcattttttttgtgaacaatggtcgcactgaggttcg

upper sequence: AT1G13195.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G27640.2 (Glycine max), 5'ss of exon 4
TAGAGCGTGAAGAAGAATGCGGTATCTGTTTAGAAACTTGCACCAAAATGGTGTTGCCTAATTGTTGCCATTCTATGTGCATCAAATGCTATCGCAATTGgtatatacacaca-----cacactttttagtttttagacctttttgacctgatgcatttactga-atctcgttgattctcaaatctgcag----------
| ||  | ||||| ||||| || || || |||||  |||||||||||||||| ||||||||||| || ||| | ||||| ||||||||||| ||||| |||||| ||  || |     ||  |   ||   |  |  | || | ||  |  ||   | ||     ||   ||   |       | | ||           
TGGAAAGAGAAGATGAATGTGGGATATGCTTAGAGCCTTGCACCAAAATGGTTTTGCCTAATTGCTGTCATGCCATGTGTATCAAATGCTACCGCAAGTGgtatgtattcatattaaacatgcacatttagtcgtctaactgtatgttcaaattggtctatcatcattgtgtgtgtgtgtgtgtgtacaatgattgcact

upper sequence: AT1G13195.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA11G37510.1 (Glycine max), 5'ss of exon 4
TAGAGCGTGAAGAAGAATGCGGTATCTGTTTAGAAACTTGCACCAAAATGGTGTTGCCTAATTGTTGCCATTCTATGTGCATCAAATGCTATCGCAATTGgtatatacacacacacactttttagtttttagacctttttgacctg-atgcatttactgaatctcgttgat----tctcaaatctgcag--------------------
|  |  | ||||| ||||| ||||| || |||||  |||||||||||||||| || |||  ||| |||||| | ||||| || |||||||| ||||| ||||| | | | ||  ||| || ||  |  | |   |||    |  |  ||||  ||||  |   | ||| ||    | | | |  ||                       
TGCAAAGAGAAGATGAATGTGGTATTTGCTTAGAGCCTTGCACCAAAATGGTTTTACCTGGTTGCTGCCATGCCATGTGTATTAAATGCTACCGCAAGTGgta-acaaataccaacatttgtttatggtcaa--cttccaaatttatatgccattaccaacaatggtttatcttttttgacacttgtgctggacttattcaacttgcag

upper sequence: AT1G13195.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0010g02200.t01 (Vitis vinifera), 5'ss of exon 4
TAGAGCGTGAAGAAGAATGCGGTATCTGTTTAGAAACTTGCACCAAAATGGTGTTGCCTAATTGTTGCCATTCTATGTGCATCAAATGCTATCGCAATTGgtatatacacacacacactttttagtttttagacctttttgacctgatgcattt--actgaatctcgttgattctcaaatctgcag----------------------------------------
|  |  | ||||| ||||| || || ||||| ||  |||||||||||||||| ||||||||||| || ||| | ||||||||||| ||||| ||  | |||||  |    |   |||    ||   ||||     || |    || |  | ||   |||| ||      ||||||  |  ||||                                          
TGAAAAGGGAAGATGAATGTGGAATTTGTTTGGAGCCTTGCACCAAAATGGTCTTGCCTAATTGCTGTCATGCAATGTGCATCAACTGCTACCGTGACTGgtaagttggtaactacaaggattgtattttctttattctgtctctaacactttccaactgcatacatgagattct--agactgctatttttctttacactcttcctcttctttatccaaattacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125081677|gb|EL142809.1|EL142809
EST:     GTGTTGCCTAATTGTTGCCATTCTATGTGCATCAAATGCTATCGCAATTG                         GAACTTGAAGTCTCAGTCATGCCCG
genomic: GTGTTGCCTAATTGTTGCCATTCTATGTGCATCAAATGCTATCGCAATTGgtatatacac ... aaatctgcagGAACTTGAAGTCTCAGTCATGCCCG