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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCTGAACTTTACAGCCATGAAGATACGATCATCAGCAATGCGTCTTGTACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtctcattgaaagtcaaatgttgctatgttgcaatcttgtaaaaatctgagtaatattgtgttgtgtgttaaacttgttag

Basic information

species Arabidopsis thaliana
transcript AT1G12900.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G12900.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA16G04940.1 (Glycine max), 5'ss of exon 4
AATGCTGAACTTTACAGCCATGAAGATACGATCATCAGCAATGCGTCTTGTACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaa-gcgtctcattgaaagtcaaatgttgctatgttgcaatcttgtaaaaatctgagtaatattgtgttgtgtgttaaacttgttag---------------
||||   |   |||||||| ||| ||  | |||||||||||||| ||||| || |||||||| || || || || |||||||| ||||| |||||||| ||||| | | ||  |   ||     |  ||  | | |  | |||  ||       |   | | ||||    |||  | |||      |                
AATGAGTATGATTACAGCCCTGATGAACCCATCATCAGCAATGCATCTTGCACCACTAACTGCCTTGCACCCTTTGTCAAGGTCCTTGATCAGAAATTCGgtaatgtgccttgtcacaacc---acatttttttttctctatcaagttgccccatccatgaaattgaagagtgcttcaaatgaaacaaaacaagtaaaatctc

upper sequence: AT1G12900.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G28240.1 (Glycine max), 5'ss of exon 4
AATGCTGAACTTTACAGCCATGAAGATACGATCATCAGCAATGCGTCTTGTACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaa-gcgtctcattgaaagtcaaatgttgctatgttgcaatcttgtaaaaatctgagtaatattgtgttgtgtgttaaacttgttag-------------------
||||   |    ||||||| ||| ||  | |||||||||||||| ||||| || |||||||| || || || || |||||||| ||||| |||||||| ||||| | | ||  |       || || ||  || |||   ||     |   |||  | | | |  ||| |     | ||||     |                    
AATGAGTATGACTACAGCCCTGATGAACCCATCATCAGCAATGCCTCTTGCACCACTAACTGCCTTGCACCCTTTGTCAAGGTCCTTGATCAGAAATTCGgtaatgtgccttgtca----ccacatttttttaagttc--attccccatccatcaaattga-agcgtgcttcaaatgaaacaaaacaagtaactagaactttataaa

upper sequence: AT1G12900.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv01s0150g00500.t01 (Vitis vinifera), 5'ss of exon 4
AATGCTGAACTTTACAGCCATGAAGATACGATCATCAGCAATGCGTCTTGTACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaag-cgtc---tcattga-------aagtcaaatgttgctatgttgcaatcttgtaaaaatctgagtaatattgtgttgtgtgttaaacttgttag
|||||||||   ||||  |  |  ||  | |||||||||||||| ||||| || ||||| || ||||| ||||| |||||| | || |||||||||||||||||  | ||   ||||| |       || | ||||  |   ||     |  |   | |  ||||   ||  | | |     |||||  |  || |||
AATGCTGAAACATACAATCCGGCCGAGCCCATCATCAGCAATGCCTCTTGCACCACTAATTGCCTCGCCCCATTTGTCAAGATCCTGGACCAGAAATTTGgtaattcatcaaatcattcatttactcaatttaaatcctataatacaatatacaaatcatcatcttcatatgaatatcaatggtgttccatatgatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125113705|gb|EL164426.1|EL164426
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATAGAACAACTACTCACTCATACACTGGTGA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAAT-GA-CAACTACTCACTCATACACTGGTGA
EST: gi|116451131|gb|EG493723.1|EG493723
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
EST: gi|124793224|gb|EH882903.1|EH882903
EST:     CTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAAGAAAATTTG                         GGATCATAAAGGGTACAATGACAACT
genomic: CTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCA-GAAA-TTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACT
EST: gi|116442534|gb|EG485126.1|EG485126
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
EST: gi|124732563|gb|EH823965.1|EH823965
EST:     ACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAAATTTG                         GGATCATAAAGGGTACAATGACAACT
genomic: ACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAA-TTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACT
EST: gi|125248771|gb|EL262856.1|EL262856
EST:     CTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATAC
genomic: CTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATAC
EST: gi|124754250|gb|EH844380.1|EH844380
EST:     GTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
genomic: GTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
EST: gi|124793900|gb|EH883579.1|EH883579
EST:     ACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAAATTTG                         GGATCATAAAGGGTACAATGACAACTAC
genomic: ACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAA-TTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTAC
EST: gi|116399242|gb|EG441834.1|EG441834
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATATACTGGTGACCAAA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
EST: gi|124943899|gb|EL020050.1|EL020050
EST:     TTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
genomic: TTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
EST: gi|116408015|gb|EG450607.1|EG450607
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
EST: gi|124779297|gb|EH869240.1|EH869240
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGG
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGG
EST: gi|125182352|gb|EL197883.1|EL197883
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GN-TCATAAAGGGTACAATGACAACTACTCACTCATAC
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATAC
EST: gi|125219382|gb|EL233467.1|EL233467
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACC
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACC
EST: gi|116473085|gb|EG515677.1|EG515677
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCA
EST: gi|124965493|gb|EL039677.1|EL039677
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         G-ATCGTAAAGGGTACAATG
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATG
EST: gi|124962499|gb|EL036920.1|EL036920
EST:     TCCATTCGTCAAGGTTCTTGACCAAAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
genomic: TCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
EST: gi|124746794|gb|EH837094.1|EH837094
EST:     CTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATAC
genomic: CTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATAC
EST: gi|125301418|gb|EL315503.1|EL315503
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGAC
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGAC
EST: gi|164022420|gb|ES117361.1|ES117361
EST:     GTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
genomic: GTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
EST: gi|124823750|gb|EH908616.1|EH908616
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCA
EST: gi|125244786|gb|EL258871.1|EL258871
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAA
EST: gi|125007892|gb|EL080161.1|EL080161
EST:     TGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACTAACTACTCACTCATACACTGGTGACCAA
genomic: TGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGAC-AACTACTCACTCATACACTGGTGACCAA
EST: gi|124892363|gb|EH971265.1|EH971265
EST:     AAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
genomic: AAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
EST: gi|116408023|gb|EG450615.1|EG450615
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
EST: gi|124709043|gb|EH800445.1|EH800445
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAA
EST: gi|124951363|gb|EL026740.1|EL026740
EST:     TGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
genomic: TGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
EST: gi|125218814|gb|EL232898.1|EL232898
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCA
EST: gi|125080602|gb|EL142142.1|EL142142
EST:     ACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
genomic: ACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
EST: gi|125220122|gb|EL234207.1|EL234207
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACA
EST: gi|124886538|gb|EH965440.1|EH965440
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACT
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACT
EST: gi|124993602|gb|EL065871.1|EL065871
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATAC
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATAC
EST: gi|124916277|gb|EH990151.1|EH990151
EST:     ACTAACTGTCTCGCTCCATTCGTCAAGGTTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATAC
genomic: ACTAACTGTCTCGCTCCATTCGTCAAGG-TTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATAC
EST: gi|124845022|gb|EH929459.1|EH929459
EST:     ACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAAATTTG                         GGATCATAAAGGGTACAATGACAACTA
genomic: ACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAA-TTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTA
EST: gi|86081325|gb|DR377082.1|DR377082
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
EST: gi|124849662|gb|EH934099.1|EH934099
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGAACAACTACTCACTCATACACTGGTGA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGA-CAACTACTCACTCATACACTGGTGA
EST: gi|125207327|gb|EL222281.1|EL222281
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCAATAAAGGGTACAATGACAACTACTCACTCA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCA-TAAAGGGTACAATGACAACTACTCACTCA
EST: gi|125206531|gb|EL221485.1|EL221485
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAA
EST: gi|116473086|gb|EG515678.1|EG515678
EST:     TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTG                         GGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA
genomic: TACTACTAACTGTCTCGCTCCATTCGTCAAGGTTCTTGACCAGAAATTTGgtaagcgtct ... aacttgttagGGATCATAAAGGGTACAATGACAACTACTCACTCATACACTGGTGACCAAA