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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGATTGGGGACTATACAGACTTCTTTGCATCTATGCATCACGCGAAGAACTGCGGACTTATGTTCCGTGGGCCTGAGAATGCGATAAACCCAAATTGgtgcgtttatgttacttttgagctgagagtttcttcatgaaatggtcaagtcgaaaggatgactctgtattaacatgacattaccatatttttcag

Basic information

species Arabidopsis thaliana
transcript AT1G12050.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164129419|gb|ES010412.1|ES010412
EST:     AACTGCGGACTTATGTTCCGTGGGCCTGAGAATGCGATAAACCCAAATTG                         GTTTCGTCTTCCCATTGCATATCATGGACGGGCAT
genomic: AACTGCGGACTTATGTTCCGTGGGCCTGAGAATGCGATAAACCCAAATTGgtgcgtttat ... tatttttcagGTTTCGTCTTCCCATTGCATATCATGGACGGGCAT
EST: gi|124839520|gb|EH923959.1|EH923959
EST:     ATAAACCCAAATTG                         GTTTCGTCTTCCCATTGCATATCATGGACGGGCATCATCTATTGTCATCTC
genomic: ATAAACCCAAATTGgtgcgtttat ... tatttttcagGTTTCGTCTTCCCATTGCATATCATGGACGGGCATCATCTATTGTCATCTC