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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATCTACCTTTGTGGGgtatgaactttgtatatttacttgaaacatccaaaatttattatgttctttgtttgttttatatagttttaatactgtctcattgctgttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G10950.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164134552|gb|ES116750.1|ES116750
EST:     TATGATCTACCTTTGTGGG                         GCTTTGTGGGTGAGCTGCATCCTGACAAAAAT-GTGAAAACGGCAAGCA
genomic: -ATGATCTACCTTTGTGGGgtatgaactt ... gctgttgtagGCTTTGTGGGTGAGCTGCATCCTGACAAAAATAGTGAAAACGGCAAGCA
EST: gi|125042691|gb|EL114960.1|EL114960
EST:     TTTTTTATGGATGATCTACCTTTGTGGG                         GCTTTGTGGGTGAGCTGCATCCTGACAAAAATAGTGAAAACGGCAAGCATG
genomic: TTTTTTATGGATGATCTACCTTTGTGGGgtatgaactt ... gctgttgtagGCTTTGTGGGTGAGCTGCATCCTGACAAAAATAGTGAAAACGGCAAGCATG