1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGAAATGAAGATCTTATCATTGTCCACGAAGCTCTCAACTTTGGAGATTGTCATCTCTCCCTTGCCgtacgttcaaatctattgtagttgtggcttatcatcaatacagatgacttcttgattgctcttttcatatgatttcag
species | Arabidopsis thaliana |
transcript | AT1G09795.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AACTTTGGAGATTGTCATCTCTCCCTTGCC ATACCCAATTATGGAATATTTGAGAATATAAAATCTCTGAAGGAGCTAGCAEST: gi|125046229|gb|EL118498.1|EL118498
genomic: AACTTTGGAGATTGTCATCTCTCCCTTGCCgtacgttcaa ... atgatttcagATACCCAATTATGGAATATTTGAGAATATAAAATCTCTGAAGGAGCTAGCA
EST: TCATTGTCCACGAAGCTCTCAACTT-GGAGATTGTCATCTCTCCCTTGCC ATACCCAATTATGGAATATT
genomic: TCATTGTCCACGAAGCTCTCAACTTTGGAGATTGTCATCTCTCCCTTGCCgtacgttcaa ... atgatttcagATACCCAATTATGGAATATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAATGAAGATCTTATCATTGTCCACGAAGCTCTCAACTTTGGAGATTGTCATCTCTCCCTTGCCgtacgttcaaatctattgtagttgtggcttatcatcaatacagatgacttcttgattgctcttttcatatgatttcag
- - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - GGAGAT