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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTCACTTGAAAGGAGACAGAAAGGACTATGACTTTGTGAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagctaatcactttgttcttactgtaaattcaagaatatctagtcttttgcctttgacaacaaagattttaagatttcgtataatttatgctctctttttttctcag

Basic information

species Arabidopsis thaliana
transcript AT1G09340.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G09340.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA19G41540.2 (Glycine max), 5'ss of exon 4
ATTCTTCACTTGAAAGGAGACAGAAAGGACTATGACTTTGTGAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgt-----aacagctaatcactt--------tgttcttactgtaaattcaagaatatctagtcttt-tgcctttgacaacaaagattttaagatttcgtataatttatgctctctt----tttttctcag
||  | || |||||||||||||| ||||||| ||||||||| || || ||||| || ||||| || || |||||||||||||| || || |||     ||   ||| |   |         ||| |||| | |  |   |  | |   || | | | |  || |        | ||    |  |||| ||  || | |    || |    | ||| ||||
ATCTTGCATTTGAAAGGAGACAGGAAGGACTTTGACTTTGTAAAATCCAGTCTCTCGGCAGAGGGATTTGATGTTGTTTATGACATAAATGgtgtgcaaattcctacttgttcacaccttctgtgcttatttttcacctacaatttcataatatatgttactcttcgggttcaaatcaccatttttcataacatatctctcttcataatatatttttcag

upper sequence: AT1G09340.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA03G38930.1 (Glycine max), 5'ss of exon 4
ATTCTTCACTTGAAAGGAGACAGAAAGGACTATGACTTTGTGAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgt-----aacagctaatcactt-tgttcttactgtaaattcaagaatatctagtcttt--tgcctttgacaacaaagatt---ttaagatttcgtataatttatgctctctttttttctcag-------------------------
||  | || |||||||||||||| |||||||  |||||||| || || ||||| |||||||| || || |||||||||||||| || || |||     ||   ||| |  ||       |   ||   |||    |  |   | |   |  | | | | ||      | ||   | | |||||   ||||  ||| |||||||    |   |                          
ATCTTGCATTTGAAAGGAGACAGGAAGGACTTCGACTTTGTAAAATCCAGTCTCTCAGCAGAGGGATTTGATGTTGTTTATGACATAAATGgtgtgcaaattcctacttgctcacaccttctgtgcttatttttcaccaataatttcataatacatgttactcttcgggttcaatcatgatttttcataacatat-ctctcttcagattcaaataaattatttgggcatatgtttcag

upper sequence: AT1G09340.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv14s0060g00820.t01 (Vitis vinifera), 5'ss of exon 4
ATTCTTCACTTGAAAGGAGACAGAAAGGACTATGACTTTGTGAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagctaatcactt----tgttcttactgtaaattcaaga-atatctagtcttttgcctttgacaacaaagattttaagatttcgtataatttatgctctctttttttctcag----------------
 || | || |||||||||||||||||||||| ||| ||||||||  | |||||| |||| |||||||| |||||||| || ||||| || |||    || |   ||||    | |   | || | |||   ||| | ||   || || | | |||||   ||   ||| |     |  ||||| || |   | |  ||       |                 
GTTTTGCATTTGAAAGGAGACAGAAAGGACTTTGAATTTGTGAAAACCAGTCTTGCAGCTGAAGGCTTTGATGTTGTCTACGATATAAATGgtgtgtgcaatgtacttgatatatctctgctttcaatgagagacacattctgttttcttcttttgagttcagtcattattta--tgagtatatttgacattttacttacaagaaaacaaatatctgacatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125039477|gb|EL111746.1|EL111746
EST:     TTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTTGAGCCCATACTAGAAGCACTACCCAAACTA
genomic: TTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAG-TTGAGCCCATACTAGAAGCACTACCCAAACTA
EST: gi|125218948|gb|EL233033.1|EL233033
EST:     GAAGTCATGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCC
genomic: GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCC
EST: gi|124792372|gb|EH882051.1|EH882051
EST:     CTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
genomic: CTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
EST: gi|124868450|gb|EH952887.1|EH952887
EST:     CGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
genomic: CGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
EST: gi|125307684|gb|EL321769.1|EL321769
EST:     GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCG
genomic: GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCG
EST: gi|124863148|gb|EH947585.1|EH947585
EST:     GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
genomic: GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
EST: gi|125040335|gb|EL112604.1|EL112604
EST:     GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAG
genomic: GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAG
EST: gi|125017495|gb|EL089764.1|EL089764
EST:     GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAG
genomic: GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAG
EST: gi|124862398|gb|EH946835.1|EH946835
EST:     TCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
genomic: TCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
EST: gi|125258036|gb|EL272121.1|EL272121
EST:     GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCAC
genomic: GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCAC
EST: gi|125246797|gb|EL260882.1|EL260882
EST:     CAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
genomic: CAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
EST: gi|125187527|gb|EL202481.1|EL202481
EST:     TGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
genomic: TGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
EST: gi|125213423|gb|EL228255.1|EL228255
EST:     GCTTCGATGTTGTTTATGATATCAACG                         GGAGGGGAGGCCGAAGAAGTTGAG-CCATACTAGAAGCACTACCCAAACTA
genomic: GCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGA-GGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTA
EST: gi|116412032|gb|EG454624.1|EG454624
EST:     GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
genomic: GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
EST: gi|125002089|gb|EL074358.1|EL074358
EST:     CTTTCAGCAGAAGGCTTCGATGTTGTTTACGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
genomic: CTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
EST: gi|125100739|gb|EL156087.1|EL156087
EST:     GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAG
genomic: GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAG
EST: gi|125008009|gb|EL080278.1|EL080278
EST:     GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAAGAAGTTGAGCCCATACTAGAAGCACTACCC
genomic: GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAA-GAAGTTGAGCCCATACTAGAAGCACTACCC
EST: gi|164226909|gb|ES086149.1|ES086149
EST:     GATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAAC
genomic: GATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAAC
EST: gi|116412031|gb|EG454623.1|EG454623
EST:     GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
genomic: GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
EST: gi|125263216|gb|EL277301.1|EL277301
EST:     TGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
genomic: TGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
EST: gi|124941309|gb|EL017678.1|EL017678
EST:     GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAG
genomic: GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAG
EST: gi|124867224|gb|EH951661.1|EH951661
EST:     TTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
genomic: TTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
EST: gi|124947840|gb|EL023647.1|EL023647
EST:     CTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
genomic: CTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
EST: gi|125165514|gb|EL191765.1|EL191765
EST:     GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACC
genomic: GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACC
EST: gi|124858704|gb|EH943141.1|EH943141
EST:     GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATA
genomic: GAAGTCAAGTCTTTCAGCAGAAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATA
EST: gi|125169805|gb|EL193623.1|EL193623
EST:     AAGGCTTCGATGTTGTTTATGATATCAACG                         GGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG
genomic: AAGGCTTCGATGTTGTTTATGATATCAACGgtaacagcta ... tttttctcagGGAGGGAGGCCGAAGAAGTTGAGCCCATACTAGAAGCACTACCCAAACTAG