1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CAGCATTCTCATCGACAATGTTGAGAAACAAACTGGTAGCCTTTACTCTGACTGGGATCTTCTCCCACCCAAGAAGATCAAGGACCCCAGCGCCAAGAAGgtattctatttcttatgaacaaccaggctaaactgagaaccaaccacttatactcaattttggagcaaactagaactaaccacaaaccataccaaagctctctgatgaacttggttgattatacctgagataccatccatcatacaaattgatccttttatttatttgtacag
species | Arabidopsis thaliana |
transcript | AT1G09210.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTGGGATCTTCTCCCACCCAAGAAGATCAAGGACCCCAGCGCCAAGAAG CCTGAGGACTGGGACGAACAAGAATACATTTCTGACCCTEST: gi|116412926|gb|EG455518.1|EG455518
genomic: ACTGGGATCTTCTCCCACCCAAGAAGATCAAGGACCCCAGCGCCAAGAAGgtattctatt ... atttgtacagCCTGAGGACTGGGACGAACAAGAATACATTTCTGACCCT
EST: CGCCAGAGAAG CCTGAGGACTGGGACGAACAAGAATACATTTCTGACCCTGAAGACAAGAAEST: gi|163997762|gb|ES199028.1|ES199028
genomic: CGCCA-AGAAGgtattctatt ... atttgtacagCCTGAGGACTGGGACGAACAAGAATACATTTCTGACCCTGAAGACAAGAA
EST: CTGGGATCTTCTCCCACCCAAGAAGATCAACGGACCCCAGCGCCAAGAAG CCTGAGGACTGGGACGAACAAGAATACATTTCTGACCCTGAAGACAAGAAAEST: gi|116412928|gb|EG455520.1|EG455520
genomic: CTGGGATCTTCTCCCACCCAAGAAGATCAA-GGACCCCAGCGCCAAGAAGgtattctatt ... atttgtacagCCTGAGGACTGGGACGAACAAGAATACATTTCTGACCCTGAAGACAAGAAA
EST: CGCCAGAGAAG CCTGAGGACTGGGACGAACAAGAATACATTTCTGACCCTGAAGACAAGAA
genomic: CGCCA-AGAAGgtattctatt ... atttgtacagCCTGAGGACTGGGACGAACAAGAATACATTTCTGACCCTGAAGACAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCATTCTCATCGACAATGTTGAGAAACAAACTGGTAGCCTTTACTCTGACTGGGATCTTCTCCCACCCAAGAAGATCAAGGACCCCAGCGCCAAGAAGgtattctatttcttatgaacaaccaggctaaactgagaaccaaccacttatactcaattttggagcaaactagaactaaccacaaaccataccaaagctctctgatgaacttggttgattatacctgagataccatccatcatacaaattgatccttttatttatttgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG