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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGAATGGAATCAGAAGGGTTTGCGATCTATGACTCTTTGATGCAACTTAAAAACGAGgtaatgttaaaatatgagttatcagcttgtgaaatgcaaacatgtaagtaataagttttgctagagattgcacaagctacttgatctgttaccgagataaacactttttcgtctccacggtatttttcatgtgagcatgttggttcttatttgtgcag

Basic information

species Arabidopsis thaliana
transcript AT1G09130.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125223696|gb|EL237781.1|EL237781
EST:     GAAGGGTTTGCGATCTATGACTCTTTGATGCAACTTAAAAACGAG                         GTACATACAGTATGTGTGGGAGCAG
genomic: GAAGGGTTTGCGATCTATGACTCTTTGATGCAACTTAAAAACGAGgtaatgttaa ... atttgtgcagGTACATACAGTATGTGTGGGAGCAG
EST: gi|86066846|gb|DR362603.1|DR362603
EST:     AATCAGAAGGGTTTGCGATCTATGACTCTTTGATGCAACTTAAAAACGAG                         GTACATACAGTATGTGTGGGAGCAGCCATAGGTCAGGCCTGTCTATTACTT
genomic: AATCAGAAGGGTTTGCGATCTATGACTCTTTGATGCAACTTAAAAACGAGgtaatgttaa ... atttgtgcagGTACATACAGTATGTGTGGGAGCAGCCATAGGTCAGGCCTGTCTATTACTT