1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGTAGACACCTGGGTCAGTCAGTCTGGAAAGAATGGTATGCGTCGTGATTGGCTAGTTCGGGACTGTAATACTGGAGAAACCTTAACACGAGCATCAAGgttagattttcttttggtatatttataagttattctcattttcttcatctgatcattcattggtctttctgatgaagatacctgatgtctttactctctt...
species | Arabidopsis thaliana |
transcript | AT1G08510.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGCTAGTTCGGGATTGTAATACTGGAGAAACCTTAACACGAGCATCAAG TGTGTGGGTGATGATGAATAAACTGACAAGGAGATTGTCAAAGATTCCTGAEST: gi|124957640|gb|EL032454.1|EL032454
genomic: TGGCTAGTTCGGGACTGTAATACTGGAGAAACCTTAACACGAGCATCAAGgttagatttt ... tatcttgcagTGTGTGGGTGATGATGAATAAACTGACAAGGAGATTGTCAAAGATTCCTGA
EST: TGGCTAGTTCGGGACTGTAATACTGGAGAAACCTTAACACGAGCATCAAG TGTGTGGGTGATGATGAATAAACTGACAAGGAGATTGTCEST: gi|125154215|gb|EL184942.1|EL184942
genomic: TGGCTAGTTCGGGACTGTAATACTGGAGAAACCTTAACACGAGCATCAAGgttagatttt ... tatcttgcagTGTGTGGGTGATGATGAATAAACTGACAAGGAGATTGTC
EST: TTCGGGACTGTAATACTGGAGAAACCTTAACACGAGCATCAAG TGTGTGGGTGATGATGAATAAACTGACAAGGAGATTGTCAAAGATTCCTGA
genomic: TTCGGGACTGTAATACTGGAGAAACCTTAACACGAGCATCAAGgttagatttt ... tatcttgcagTGTGTGGGTGATGATGAATAAACTGACAAGGAGATTGTCAAAGATTCCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTAGACACCTGGGTCAGTCAGTCTGGAAAGAATGGTATGCGTCGTGATTGGCTAGTTCGGGACTGTAATACTGGAGAAACCTTAACACGAGCATCAAGgttagattttcttttggtatatttataagttattctcattttcttcatctgatcattcattggtctttctgatgaagatacctgatgtctttactctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagata