Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATACTACAACAGCTCCAACCGATCCAACAGAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaacaaatactaatcccttactttctctctttcctttcttggattgaacatttcttacatatgaattttacttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G08110.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058486|gb|DR354243.1|DR354243
EST:     GAGAGAACGGTTTAGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|164071570|gb|ES210398.1|ES210398
EST:     AACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAAGGTTATCACAATGGGA
genomic: AACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAA-GGTTATCACAATGGGA
EST: gi|163996677|gb|ES146529.1|ES146529
EST:     GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGG
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGG
EST: gi|86058484|gb|DR354241.1|DR354241
EST:     GAGAGAACGGTTTAGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|86058487|gb|DR354244.1|DR354244
EST:     GAGAGAACGGTTTAGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAA
EST: gi|124905866|gb|EH979946.1|EH979946
EST:     CGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: CGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|164008433|gb|ES056397.1|ES056397
EST:     CCGGCAACAATTAGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: CCGGCAACAATT-GAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|124832562|gb|EH917001.1|EH917001
EST:     GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTAACAAGAGAGTGAT
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTA-CA-GAGAGTGAT
EST: gi|86042017|gb|DR337772.1|DR337772
EST:     GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|86058483|gb|DR354240.1|DR354240
EST:     GAGAGAACGGTTTAGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|164201310|gb|ES050439.1|ES050439
EST:     CCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAAGTTTAAAGGTTATCACAATGGGA
genomic: CCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGA-GTTTAAAGGTTATCACAATGGGA
EST: gi|164216707|gb|ES198873.1|ES198873
EST:     AACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: AACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|125320038|gb|EL334123.1|EL334123
EST:     GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAG
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAG
EST: gi|86042021|gb|DR337776.1|DR337776
EST:     GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|86058480|gb|DR354237.1|DR354237
EST:     GAGAGAACGGTTTAGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|86058481|gb|DR354238.1|DR354238
EST:     GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|164137702|gb|ES076473.1|ES076473
EST:     CCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: CCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|86079248|gb|DR375005.1|DR375005
EST:     GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|86058489|gb|DR354246.1|DR354246
EST:     GAGAGAACGGTTTAGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|86086149|gb|DR381908.1|DR381908
EST:     GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGTGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|86058490|gb|DR354247.1|DR354247
EST:     AGAGAACGGTTTAGACATTTGGTCAACCGGCAACAATTGAAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: AGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAA-TTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|301501106|gb|HO206646.1|HO206646
EST:     GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|164009687|gb|ES206363.1|ES206363
EST:     AACCGGCAACAATTGAATTCGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGA
genomic: AACCGGCAACAATTGAATT-GACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGA
EST: gi|164137104|gb|ES212519.1|ES212519
EST:     AACCGGTCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: AACCGG-CAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|125146475|gb|EL181184.1|EL181184
EST:     GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCA
EST: gi|86058479|gb|DR354236.1|DR354236
EST:     GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|125024517|gb|EL096786.1|EL096786
EST:     CGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAAGGTTATCACAATGGGA
genomic: CGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAA-GGTTATCACAATGGGA
EST: gi|86058488|gb|DR354245.1|DR354245
EST:     GAGAGAACGGTTTAGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|86058485|gb|DR354242.1|DR354242
EST:     GAGAGAACGGTTTAGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA
EST: gi|86058491|gb|DR354248.1|DR354248
EST:     GAGAGAACGGTTTAGACATTTGGTCAACCGGCAACAATTGAATTGACTCA                         CAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTCATCACAATGGGAA
genomic: GAGAGAACGGTTTGGACATTTGGTCAACCGGCAACAATTGAATTGACTCAgtaagaaaca ... ttacttgcagCAACTGGGGTACAGAGAGTGATCCTGAGTTTAAAGGTTATCACAATGGGAA