1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACTCGGTGGTAGAGCTGCCGAAGAAGTCATCTTTGGTGAGTCTGAGGTGACTACTGGTGCAGTTAGTGACTTGCAACAGATCACCGGTTTGGCTAAGCAGgtatctcttctacactcccagcttcagtatttttttctgttatcctaaactagtgaatgaacttgacagtatatcatcatttacttgcag
species | Arabidopsis thaliana |
transcript | AT1G06430.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTACTGGTGCAGTTAGTGACTTGCAACAGATCACCGGTTTGGCTAAGCAG ATGGTGACAACATTTGGEST: gi|124717642|gb|EH809044.1|EH809044
genomic: CTACTGGTGCAGTTAGTGACTTGCAACAGATCACCGGTTTGGCTAAGCAGgtatctcttc ... ttacttgcagATGGTGACAACATTTGG
EST: TACTGGTGCAGTTAGTTGACTTGCAACAGATCACCGGTTTGGCTAAGCAG ATGGTGACAACATTTGGGATGTCTGAAATCGGACCAEST: gi|116446059|gb|EG488651.1|EG488651
genomic: TACTGGTGCAGTTAG-TGACTTGCAACAGATCACCGGTTTGGCTAAGCAGgtatctcttc ... ttacttgcagATGGTGACAACATTTGGGATGTCTGAAATCGGACCA
EST: CTACTGGTGCAGTTAGTGACTTGCAACAGATCACCGGTTTGGCTAAGCAG ATGGTGACAACATTTGGGATGTCTGAAATCGGACCATGGTCGCTAATGGATEST: gi|86063813|gb|DR359570.1|DR359570
genomic: CTACTGGTGCAGTTAGTGACTTGCAACAGATCACCGGTTTGGCTAAGCAGgtatctcttc ... ttacttgcagATGGTGACAACATTTGGGATGTCTGAAATCGGACCATGGTCGCTAATGGAT
EST: CTACTGGTGCAGTTAGTGACTTGCAACAGATCACCGGTTTGGCTAAGCAG ATGGTGACAACATTTGGGATGTCTGAAATCGGACCATGGTCGCTAATGGAT
genomic: CTACTGGTGCAGTTAGTGACTTGCAACAGATCACCGGTTTGGCTAAGCAGgtatctcttc ... ttacttgcagATGGTGACAACATTTGGGATGTCTGAAATCGGACCATGGTCGCTAATGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCGGTGGTAGAGCTGCCGAAGAAGTCATCTTTGGTGAGTCTGAGGTGACTACTGGTGCAGTTAGTGACTTGCAACAGATCACCGGTTTGGCTAAGCAGgtatctcttctacactcccagcttcagtatttttttctgttatcctaaactagtgaatgaacttgacagtatatcatcatttacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA