1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TATGGAGTATGTACCTGAGACTTTATACCGGGTTTTGAGGCACTATACTAGTTCTAATCAGAGGATGCCAATTTTCTATGTCAAGCTTTACACATATCAAgtatgtactgttatttgcagttagttctcacaaatattataatttattagaatttactctgaaactgatttgaaatatctattgtgcag
species | Arabidopsis thaliana |
transcript | AT1G06390.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: NNNCTAATCAGAGGATGCCAATTTTCTATGTCAAACTTTACACATATCAA ATCTTTAGAGGTTTGGCTTACATCCATACTGTTCEST: gi|164046531|gb|ES194150.1|ES194150
genomic: GTTCTAATCAGAGGATGCCAATTTTCTATGTCAAGCTTTACACATATCAAgtatgtactg ... tattgtgcagATCTTTAGAGGTTTGGCTTACATCCATACTGTTC
EST: TTTTCTATGTCAAACTTTACACATATCAA ATCTTTAGAGGTTTGGCTTACATCCATACTGTTCCCGGTGTTTGC-ACAGAEST: gi|86037641|gb|DR333396.1|DR333396
genomic: TTTTCTATGTCAAGCTTTACACATATCAAgtatgtactg ... tattgtgcagATCTTTAGAGGTTTGGCTTACATCCATACTGTTCCCGGTGTTTGCCACAGA
EST: GTTCTAATCAGAGGATGCCAATTTTCTATGTCAAACTTTACACATATCAA AATCTTTAGAGGTTTTGGCTTACATCCATACTGTTC
genomic: GTTCTAATCAGAGGATGCCAATTTTCTATGTCAAGCTTTACACATATCAAgtatgtactg ... tattgtgcagA-TCTTTAGAGGTTT-GGCTTACATCCATACTGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGGAGTATGTACCTGAGACTTTATACCGGGTTTTGAGGCACTATACTAGTTCTAATCAGAGGATGCCAATTTTCTATGTCAAGCTTTACACATATCAAgtatgtactgttatttgcagttagttctcacaaatattataatttattagaatttactctgaaactgatttgaaatatctattgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT