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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAAATCAGAGATCATGATGGCAACACATGTCCTAACGTCCGCATAGCTGACTGTGGACACAAAATTGGTTTGAATGGTGTTGACAATGGCCGTATATGgtaatgcacacaacttaatgttatatagtttttatcttgtacaaagggtgtgtacttcatatggaagattgtaccatgtttatag

Basic information

species Arabidopsis thaliana
transcript AT1G06310.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G06310.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os06g24704.1 (Oryza sativa), 5'ss of exon 4
CTCAAATCAGAGATCATGATGGCAACACATGTCCTAACGTCCGCATAGCTGACTGTGGACACAAAATTGGTTTGAATGGTGTTGACAATGGCCGTATATGgtaatgcacacaacttaatgttatatagtttttatcttgtacaaagggtgt-gtacttcatatggaagattgtaccatgtttatag
|||| || || ||| |  |||  ||       |||||  |||  |||||||||||||| || |||||||| || ||||||||||| ||||| || || |||| |  |     ||||     | || ||||||    |  ||  | |    | |||  | | ||  ||   | |  ||         
CTCAGATTAGGGATGAACATGAAAATGTTATGCCTAATATCCAGATAGCTGACTGTGGCCATAAAATTGGATTAAATGGTGTTGATAATGGACGAATTTGgtgagcccttgtactt----ctgtaaagttttgtcttcctatcacgcacattgtaaatta-atttaactgtctgtcag--------

upper sequence: AT1G06310.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA06G43840.1 (Glycine max), 5'ss of exon 4
CTCAAATCAGAGATCATGATGGCAACACATGTCCTAACGTCCGCATAGCTGACTGTGGACACAAAATTGGTTTGAATGGTGTTGACAATGGCCGTATATGgtaatgcacacaactta-----atgttatat----agtttttatcttgtacaaagggtgtgtacttcatatggaagattgtaccatgtttatag
| |||||||| |||   ||||| |||| |||||| ||| |||| |||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||  | |||  ||      | |||  |     |   |  || || || ||| |  ||  ||     |   |  |||      ||| |  ||
CCCAAATCAGGGATTCAGATGGAAACATATGTCCAAACATCCGAATAGCTGATTGTGGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGgtaatatatacatttttcaaacaagttgcacctgaaaaatgaattttatataaaaga-gtaaac---gcagaaattattcacatgtgtcttcag

upper sequence: AT1G06310.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 4
CTCAAATCAGAGATCATGATGGCAACACATGTCCTAACGTCCGCATAGCTGACTGTGGACACAAAATTGGTTTGAATGGTGTTGACAATGGCCGTATATGgtaatgcacacaacttaatgttatatagtttttatcttgtacaaagggtgtgtacttcatatggaagattgtaccatgtttatag--------
| |||||||| |||   ||||| |||| |||||| ||| |||| |||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||  | |||  ||    | | | |  ||  | |||| | || |  | |    |  ||| | ||  |       |    | |         
CCCAAATCAGGGATTCAGATGGAAACATATGTCCAAACATCCGAATAGCTGATTGTGGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGgtaatatatacatttt----tcaaacaagttgca-cttgaaaaatgaatttcctttagataagtaaactcaagttctagccacatgtcttcag

upper sequence: AT1G06310.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S149_61V6.1 (Physcomitrella patens), 5'ss of exon 4
CTCAAATCAGAGATCATGATGGCAACACATGTCCTAACGTCCGCATAGCTGACTGTGGACACAAAATTGGTTTGAATGGTGTTGACAATGGCCGTATATGgtaatgcacacaacttaat-gttatatagttttta----tcttgtacaaagggtgtgtacttca-tatggaagattgtaccatgtttatag-------------------------------------------------------------------------------------------------------
 |||| |  | |||||  | |||     |   |||    ||||||| || |||||||| ||||| |||||||||||||| || ||||||||||| || |||||| |||   |   |  |  || || || | ||      ||| |     | ||    |||  | ||   |   |||     ||   ||                                                                                                         
GTCAATTACGGGATCAATACGGCCGTGTAATGCCTGGAATCCGCATCGCCGACTGTGGTCACAAGATTGGTTTGAATGGGGTAGACAATGGCCGCATTTGgtaa-gcattaattatgttcattttaaagctcttgatgcccttttctcttgagttccaactcgagtacaaacagttgatgattggcaattataaaagcagtaaattgttttccaacacattgaagcagacaatcgttccgttgttttatcaagcattactacatctgacttcaagcaacacacaatatttgcag

upper sequence: AT1G06310.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S37_122V6.1 (Physcomitrella patens), 5'ss of exon 4
CTCAAATCAGAGATCATGATGGCAACACATGTCCTAACGTCCGCATAGCTGACTGTGGACACAAAATTGGTTTGAATGGTGTTGACAATGGCCGTATATGgtaa---tgcacacaacttaatgttatatagtttttatcttgtacaaagggtg---tgtacttcatatggaagattgtaccatgtttatag-------------------------------------------
 |||  |  | |||||  ||||| |       |||    | ||||| || || ||||| |||||||||||||||||||| || |||||||| ||||| |||| |   |  ||    |||| | |    ||||     |  || |  ||  |||   |||  ||     | |  || || | || | |||                                             
GTCAGTTACGGGATCAATATGGCCATGTTATGCCTGGGATACGCATCGCCGATTGTGGTCACAAAATTGGTTTGAATGGCGTGGACAATGGTCGTATTTGgtgagtattaacggttcttagtttgcactagtaaaattggtgaaagaacagtgcattgttttttgctcgaataatcgttctatttctatgaagtattatgccatctcactctaaacaacacaaactgttggtag