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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAAATCAGGGATCAAGATGGCAGCATATGTCCAAATATCCGCATTGCTGACTGTGGACACAAAATTGGTCTAAATGGTGTTGACAATGGCCGGATCTGgtataacacacaactccgtttacttttattttatcttatactaaggtaacttcaatggaagattgcactttgattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G06290.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G06290.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA06G43840.1 (Glycine max), 5'ss of exon 4
CCCAAATCAGGGATCAAGATGGCAGCATATGTCCAAATATCCGCATTGCTGACTGTGGACACAAAATTGGTCTAAATGGTGTTGACAATGGCCGGATCTGgtataacacacaactcc------gtttactttt----attttatcttatactaaggtaacttcaatggaagattgcac-tttgattgcag
||||||||||||||  |||||| | |||||||||||| ||||| || ||||| ||||| |||||||||||| ||||||| ||||| |||||||| ||||||||  | | |||  |          || |   |    | |  || |||||  || |      |   | ||   | ||| | ||  | |||
CCCAAATCAGGGATTCAGATGGAAACATATGTCCAAACATCCGAATAGCTGATTGTGGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGgtaatatatacatttttcaaacaagttgcacctgaaaaatgaattttatataaaagagtaaacgcagaaattattcacatgtgtcttcag

upper sequence: AT1G06290.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G14060.1 (Glycine max), 5'ss of exon 4
CCCAAATCAGGGATCAAGATGGCAGCATATGTCCAAATATCCGCATTGCTGACTGTGGACACAAAATTGGTCTAAATGGTGTTGACAATGGCCGGATCTGgtataacacacaactccgtttacttttattttatcttatactaaggtaacttcaatggaagattgcactttgattgcag--------------
||||||||||||||  |||||| | |||||||||||| ||||| || ||||| ||||| |||||||||||| ||||||| ||||| |||||||| ||||||||  | | |||  |   || |      ||  |  | | |  || | |  | |  | ||  | |  |||    ||  ||              
CCCAAATCAGGGATTCAGATGGAAACATATGTCCAAACATCCGAATAGCTGATTGTGGTCACAAAATTGGTTTAAATGGAGTTGATAATGGCCGTATCTGgtaatatatacattt---ttcaaacaagttgcacttgaaa--aatgaatttcctttagataagtaaactcaagttctagccacatgtcttcag

upper sequence: AT1G06290.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S149_61V6.1 (Physcomitrella patens), 5'ss of exon 4
CCCAAATCAGGGATCAAGATGGCAGCATATGTCCAAATATCCGCATTGCTGACTGTGGACACAAAATTGGTCTAAATGGTGTTGACAATGGCCGGATCTGgtataacacacaactccgtttactttta--------------ttttatcttat------actaaggtaacttcaatggaagattgc--actttgattgcag----------------------------------------------------------------------------------------------
  ||| |  |||||||| | ||| |  ||   ||    |||||||| || |||||||| ||||| |||||| | ||||| || ||||||||||| || ||||| | ||   || |  ||| | ||| |              |||| ||||        |||   |||    || | || |||||   | | | |  ||||                                                                                              
GTCAATTACGGGATCAATACGGCCGTGTAATGCCTGGAATCCGCATCGCCGACTGTGGTCACAAGATTGGTTTGAATGGGGTAGACAATGGCCGCATTTGgta-agcat-taattatgttcattttaaagctcttgatgcccttttctcttgagttccaactcgagtacaaacagttgatgattggcaattataaaagcagtaaattgttttccaacacattgaagcagacaatcgttccgttgttttatcaagcattactacatctgacttcaagcaacacacaatatttgcag