Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGACCACACTGTAAAAATTATTGATTGTGAGACAGGAAAATGCTTAAAAATATTGACTGGCCATCGAAGGACACCCTGGGTGgtgagttagagaatgctatctcttttctcttaacttcattgactctttgatttatcatggttactaggtagcactaacttgaccagaaccgtctctagat...

Basic information

species Arabidopsis thaliana
transcript AT1G04140.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04140.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 4
TGGTGACCACACTGTAAAAATTATTGATTGTGAGACAGGAAAATGCTTAAAAATATTGACTGGCCATCGAAGGACACCCTGGGTGgtgagttagag--aatgctatctcttttctcttaacttcattgactctttgatttatcatggttactaggtagcactaacttgaccagaaccgtctctagat
|||||||||||||||||| || ||||||||  | || ||||  ||||||||  | || ||||| |||||||||||||| |||||||| |||  |||  ||    || |   |        ||| |||  ||| ||  | |  ||||    |||  ||  |   | |  | ||| | |   |  |   
TGGTGACCACACTGTAAAGATAATTGATTGCCATACTGGAAGCTGCTTAAAGGTGTTAACTGGTCATCGAAGGACACCTTGGGTGgtaagtctgagttaagaacatatgcatcaagcagtctttatttgctccttattcttacatgaaatcta--taataactattgtagcagcaacacataaaatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116443186|gb|EG485778.1|EG485778
EST:     CAGGAAAATGCTTAAAAATATTGACTGGCCATCGAAGGACACCCTGGGTG                         GTCAGATTTCACCCGCGCCACTCAGAAATAGTTGCTAGTGGAAGTTTAGAT
genomic: CAGGAAAATGCTTAAAAATATTGACTGGCCATCGAAGGACACCCTGGGTGgtgagttaga ... ttctctacagGTCAGATTTCACCCGCGCCACTCAGAAATAGTTGCTAGTGGAAGTTTAGAT
EST: gi|86085412|gb|DR381171.1|DR381171
EST:     CAGGAAAATGCTTAAAAATATTGACTGGCCATCGAAGGACACCCTGGGTG                         GTCAGATTTCACCCGCGCCACTCAGAAATAGTTGCTAGTGGAAGTTTAGAT
genomic: CAGGAAAATGCTTAAAAATATTGACTGGCCATCGAAGGACACCCTGGGTGgtgagttaga ... ttctctacagGTCAGATTTCACCCGCGCCACTCAGAAATAGTTGCTAGTGGAAGTTTAGAT