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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACTTTGCAACTCTTGTTGGGACATATGCCCGGGGATTTTCCATCATCATCGAGCCTTATGACGAGAGAATGCCCCATATTCCAGATCCTATATTGCAGgtaaatatggtgttgacctactttcttttgagtattgtcactgggattttaagggattatgactcacacgtaaatgctaccgtttgaataattgagaattgtatctgaaacatatatccttttgtatcttag

Basic information

species Arabidopsis thaliana
transcript AT1G03190.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03190.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G09080.1 (Glycine max), 5'ss of exon 4
CGACTTTGCAACTCTTGTTGGGACATATGCCCGGGGATTTTCCATCATCATCGAGCCTTATGACGAGAGAATGCCCCATATTCCAGATCCTATATTGCAGgtaaatatggtgttgacctactttcttttgagta---ttgtcactgggattttaagg--gattatgactcaca-cgtaaatgctaccgtttgaataattgagaattgtatctgaaacatatatccttttg----tatcttag
 || ||||| || ||||| || || |||||||| || ||||| || || || || |||| ||| ||| ||||||| ||||||||||||||| |||| ||||| |  ||  |||||   |  ||| | || | |    |||    |   |  ||||      || ||  |  || | |  ||        |    | ||  || | | | | |   ||   | |  | |       || | ||
TGATTTTGCCACCCTTGTAGGAACGTATGCCCGTGGTTTTTCTATTATAATTGAACCTTTTGATGAGCGAATGCCACATATTCCAGATCCTGTATTACAGgttagcat--tgttgttttgatttttatttactctatttgctgttttaaccttaaaattagttctgttttgcaacatttatttatttcctgtgtttatctagtactctttttcttactccttttttatcaataacatttcag

upper sequence: AT1G03190.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ08988 (Selaginella moellendorffii), 5'ss of exon 3
CGACTTTGCAACTCTTGTTGGGACATATGCCCGGGGATTTTCCATCATCATCGAGCCTTATGACGAGAGAATGCCCCATATTCCAGATCCTATATTGCAGgtaaatatggtgttgacctactttcttttgagtattgtcactgggattttaagggattatgactcacacgtaaatgctaccgtttgaataattgagaattgtatctgaaacatatatccttttgtatcttag
| ||||    ||||| ||||| || ||  | || || || |||||||||||||| |||||||||||| | ||||| ||||||||||||||  | ||||| |||  | |  |  ||  || | || ||  ||  |||   ||        |  ||  |  |   |  ||                                                                
CAACTTCCTTACTCTCGTTGGCACCTACACTCGCGGTTTCTCCATCATCATCGAACCTTATGACGAGCGTATGCCTCATATTCCAGATCCAGTCTTGCAAgtacgtgttttcctg--cttcgtttttccgatcattcggaccaaacgcctcgggtttgtttggttgcag---------------------------------------------------------------

upper sequence: AT1G03190.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: EFJ30044 (Selaginella moellendorffii), 5'ss of exon 3
CGACTTTGCAACTCTTGTTGGGACATATGCCCGGGGATTTTCCATCATCATCGAGCCTTATGACGAGAGAATGCCCCATATTCCAGATCCTATATTGCAGgtaaatatggtgttgacctactttcttttgagtattgtcactgggattttaagggattatgactcacacgtaaatgctaccgtttgaataattgagaattgtatctgaaacatatatccttttgtatcttag
| ||||    ||||| ||||| || ||  | || || || |||||||||||||| |||||||||||| | ||||| ||||||||||||||  | ||||| |||  | |  |  ||      ||| ||  ||  |||   ||        |  |    | ||  |  ||                                                                
CAACTTCCTTACTCTCGTTGGCACCTACACTCGCGGTTTCTCCATCATCATCGAACCTTATGACGAGCGTATGCCTCATATTCCAGATCCAGTCTTGCAAgtacgtgttttcctgcttcgtttttttccgatcattcggaccaaacgcctcggtttgtttggtt-gcag---------------------------------------------------------------