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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGGGACATCTGAGAACACTAGGGTCATTATTGATAGTGGTGCTGTCCCTTTATTCGTCAAACTTCTTAGTTCTGCAAGTGAGGAAGTTCGAGAACAGgtatcaatttagattcaatatcaattttctttctattgttctggcaaagaaactcttagatcaaattgctgatgactcgattccgactgttttaacatcctgatttctatgtttttttcccctgattatag

Basic information

species Arabidopsis thaliana
transcript AT1G02690.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068466|gb|DR364223.1|DR364223
EST:     GTTCTGCAAGTGAGGAAGTTCGAGAACAG                         GCTGTATGGGCATTGGGAAACGTTGCTGGTGACTCGCCAAAATGTCGTGAT
genomic: GTTCTGCAAGTGAGGAAGTTCGAGAACAGgtatcaattt ... ctgattatagGCTGTATGGGCATTGGGAAACGTTGCTGGTGACTCGCCAAAATGTCGTGAT
EST: gi|164018212|gb|ES114203.1|ES114203
EST:     CGTCAAACTTCTTAGTTCTGCAAGTGAGGAAGTTCGAGAACAG                         GCTGTATGGGCATTGGGAAACGTTGCTGGTGACTCGCCAAAATGTCGTGAT
genomic: CGTCAAACTTCTTAGTTCTGCAAGTGAGGAAGTTCGAGAACAGgtatcaattt ... ctgattatagGCTGTATGGGCATTGGGAAACGTTGCTGGTGACTCGCCAAAATGTCGTGAT