1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTAAAAACGCGTTGCTGTCAACGTTCTTGTTCCTAGATCAAATTGTGTGGCTTGGCAGGACTGGGATTTACAAGgttaggagaagcctgcaatataggagactttatttccttcaggttaaactgagcctactctgtttatgttatgaatctgctgctttag
species | Arabidopsis thaliana |
transcript | AT1G01820.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTGGGATTTACAAG GACAAAGAACGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTTGATGEST: gi|86081227|gb|DR376984.1|DR376984
genomic: ACTGGGATTTACAAGgttaggagaa ... gctgctttagGACAAAGAACGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTGGATG
EST: TGTGTGGCTTGGCAGGACTGGGATTTACAAG GACAAAGAACGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTGGATGEST: gi|163976914|gb|ES193346.1|ES193346
genomic: TGTGTGGCTTGGCAGGACTGGGATTTACAAGgttaggagaa ... gctgctttagGACAAAGAACGTGCTGAGATTCTTGGACGTATATCACTTTTCTGTTGGATG
EST: TCTTGTTCCTAGATCAAATTGTGTGGCTTGGCAGGACTGGGATTTACAAG GACAAAGAACGTGCTGAGATTCTTG
genomic: TCTTGTTCCTAGATCAAATTGTGTGGCTTGGCAGGACTGGGATTTACAAGgttaggagaa ... gctgctttagGACAAAGAACGTGCTGAGATTCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTAAAAACGCGTTGCTGTCAACGTTCTTGTTCCTAGATCAAATTGTGTGGCTTGGCAGGACTGGGATTTACAAGgttaggagaagcctgcaatataggagactttatttccttcaggttaaactgagcctactctgtttatgttatgaatctgctgctttag
- - - - - - - - - - - - - - - - - AGATCA