1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAGGCAAAGAACGAAAAACGGTGGCTGGTTCCTCGATACTTTGTCCAATGTATCCAAACGAGATCCTGCTGCACAATTCATTATCGCATACAGAAACAAGgtaaacctttttctctctcttacttttcatttatcttgcttacaatgccagatagaccattataaattggttttggtgcatgaacttgttttccag
species | Arabidopsis thaliana |
transcript | AT1G01510.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGATCCTGCTGCACAATTCATTATCGCATACAGAAACAAG GACACTGTTGGTCTGAGATCATTTGCTGCTGGTGGGAAGTTACTGCAGEST: gi|116426226|gb|EG468818.1|EG468818
genomic: GAGATCCTGCTGCACAATTCATTATCGCATACAGAAACAAGgtaaaccttt ... tgttttccagGACACTGTTGGTCTGAGATCATTTGCTGCTGGTGGGAAGTTACTGCAG
EST: TATCCAAACGAGATCCTGCTGCACAATTCATTATCGCATACAGAAACAAG GACACTGTTGGTCTGAGATCATTTGCTGCTGGTGGGAAGTTACTGCAGEST: gi|116426237|gb|EG468829.1|EG468829
genomic: TATCCAAACGAGATCCTGCTGCACAATTCATTATCGCATACAGAAACAAGgtaaaccttt ... tgttttccagGACACTGTTGGTCTGAGATCATTTGCTGCTGGTGGGAAGTTACTGCAG
EST: TATCCAAACGAGATCCTGCTGCACAATTCATTATCGCATACAGAAACAAG GACACTGTTGGTCTGAGATCATTTGCTGCTGGTGGGAAGTTACTGCAG
genomic: TATCCAAACGAGATCCTGCTGCACAATTCATTATCGCATACAGAAACAAGgtaaaccttt ... tgttttccagGACACTGTTGGTCTGAGATCATTTGCTGCTGGTGGGAAGTTACTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGCAAAGAACGAAAAACGGTGGCTGGTTCCTCGATACTTTGTCCAATGTATCCAAACGAGATCCTGCTGCACAATTCATTATCGCATACAGAAACAAGgtaaacctttttctctctcttacttttcatttatcttgcttacaatgccagatagaccattataaattggttttggtgcatgaacttgttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC