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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCCGTCCTGGTTGCATAAACAGAAAGAAAAGCAACGAATTATTTGGGCCTACAAAATTCTTTTCCTTGATGTCATATTTCCTCTCTCATTGGAAAAGgtacagatgatcatattttcatttctttcttgcgattttgatgcttggaagatgtcactataaggtattcgacatgtgttctgtag

Basic information

species Arabidopsis thaliana
transcript AT1G71220.2
intron # 32
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71220.2 (Arabidopsis thaliana), 5'ss of exon 32
lower sequence: LOC_Os02g44510.1 (Oryza sativa), 5'ss of exon 12
ATGGCCGTCCTGGTTGCATAAACAGAAAGAAAAGCAACGAATTATTTGGGCCTACAAAATTCTTTTCCTTGATGTCATATTTCCTCTCTCATTGGAAAAGgtacaga-tgatcatattttcatttct-----ttcttg-cgattttgatgcttggaagatgtcactataaggtattcgacatgtgttctgtag--------------------
||||||  | |||||||| ||||||||||| ||||| |||||||| ||||| ||||| ||  | || || |||||||||||||| || ||| ||   ||||||     | ||  ||| |||||   |     ||| || | ||  | ||   |     |  | |     || |  |||  |||  |  | |                      
ATGGCCAACATGGTTGCACAAACAGAAAGAGAAGCAGCGAATTATATGGGCATACAAGATCTTGTTTCTAGATGTCATATTTCCACTTTCACTGAGGAAGgtattttcttatgttatattcatccttgtagattcatgaccatccttatttatacgttaactaagccacagttcatcgtgatggataatattactctgacactttccatgtag

upper sequence: AT1G71220.2 (Arabidopsis thaliana), 5'ss of exon 32
lower sequence: GLYMA08G20020.1 (Glycine max), 5'ss of exon 32
ATGGCCGTCCTGGTTGCATAAACAGAAAGAAAAGCAACGAATTATTTGGGCCTACAAAATTCTTTTCCTTGATGTCATATTTCCTCTCTCATTGGAAAAGgtac--agatgatcatatttt-----------catttctttcttgcgattt-tgatgcttggaagatgtcactataaggtattcgacatgtgttctgtag------------------------------------------------------
||||||  | ||||||||||| |||||||||||||| ||||| |||||||| || |||||| | |||||||||||||| ||||| || || ||||| ||||||    |||  || | || |           |||   ||| ||  | | | |  |||       ||||||   |     || |  ||    |    | |                                                      
ATGGCCTACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAATAATTTGGGCATATAAAATTTTATTCCTTGATGTCATCTTTCCCCTTTCCTTGGAGAAGgtatcatgattttcttcttctgcatcaaatcccatgcttttattttgttctcttctgcactcttaatgtcatggtgtcacatgcaccacacatggcattgacaaggatgctggtaatgaaaagaaaatttttacttaaaaatttgtgtttgcag

upper sequence: AT1G71220.2 (Arabidopsis thaliana), 5'ss of exon 32
lower sequence: GLYMA05G30230.1 (Glycine max), 5'ss of exon 33
ATGGCCGTCCTGGTTGCATAAACAGAAAGAAAAGCAACGAATTATTTGGGCCTACAAAATTCTTTTCCTTGATGTCATATTTCCTCTCTCATTGGAAAAGgtacagatgatcatattttca-------tttctttcttgcgattttgatgcttggaagatgtcactataaggt-attcgacatgtgttctgtag------
 |||||  | ||||||||||| |||||||||||||| ||||| |||||||| || |||||  | ||||| |||||||| || || || || ||||| ||||||     | |  |  ||          || | | |||  | ||||  |  || | | |  | | |  || || |  | |||    |  |  |       
GTGGCCCACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAATAATTTGGGCATATAAAATCTTATTCCTAGATGTCATTTTCCCCCTTTCTTTGGAGAAGgtatcacagtttcttcttctgcatcaagttccatgcttttggtttttgtcttttgcacaattaatttcaatgtcagactacacaactcttagaatgttgg

upper sequence: AT1G71220.2 (Arabidopsis thaliana), 5'ss of exon 32
lower sequence: GLYMA08G13400.1 (Glycine max), 5'ss of exon 35
ATGGCCGTCCTGGTTGCATAAACAGAAAGAAAAGCAACGAATTATTTGGGCCTACAAAATTCTTTTCCTTGATGTCATATTTCCTCTCTCATTGGAAAAGgtacagatgatcatattttc----------atttctttcttgcgattttgatgcttggaagatgtcactataaggt-attcgacatgtgttctgtag------------------------------------------------------------------
 |||||  | ||||||||||| |||||||||||||| ||||  |||||||| || |||||  | ||||| |||||||| || || || || ||||| |||||||    | |  |  ||             || | | |||    ||||  |  || | |    | | |  || || |  | |||    | ||||                                                                    
GTGGCCCACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAAGAATTTGGGCATATAAAATCTTATTCCTAGATGTCATTTTCCCCCTTTCTTTGGAGAAGgtaccacagtttcttcttcttctgcatcaagttccatgctttttgtttttgtcttttgcactattaatttcaatgtcacactacaca-atgctgtgacaaagataatgaagaattaaaatcccttacaggaaaatctgtctaaaatctaccaatattatgcag

upper sequence: AT1G71220.2 (Arabidopsis thaliana), 5'ss of exon 32
lower sequence: Vv12s0034g02230.t01 (Vitis vinifera), 5'ss of exon 33
ATGGCCGTCCTGGTTGCATAAACAGAAAGAAAAGCAACGAATTATTTGGGCCTACAAAATTCTTTTCCTTGATGTCATATTTCCTCTCTCATTGGAAAAGgtacagatgatcatattttcatttctttct----tgcgattttgatgct-tggaagatgtcactataaggtattcgac---atgtgt-tctgtag---------------------------------
||||||  | ||||||||||| |||||||||||||| |||||||| ||||| || ||||| || ||||||||||| || || || || || ||||||||||||     | |   | |     ||     |    |||    ||| | |  |   |    ||    || | | | | ||   |  ||  | | |||                                 
ATGGCCAACATGGTTGCATAAGCAGAAAGAAAAGCAGCGAATTATCTGGGCATATAAAATCCTGTTCCTTGATGTTATTTTCCCACTTTCTTTGGAAAAGgtaatttggtttcaagtcctgcttaaacatagagtgctgccttgtttccatttcattcatcttcttatgctttccaacttcacatgcatgtatagcttttcacaatctatcaatgtgtatatctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164129596|gb|ES046359.1|ES046359
EST:     CCTACAAAATTCTTTTCCTTGATGTCATATTTCCTCTCTCATTGGAAAAG                         GTTATATTTGTCGACGCAGATCAAATTATAAGGACAGACATGGGAGAAC
genomic: CCTACAAAATTCTTTTCCTTGATGTCATATTTCCTCTCTCATTGGAAAAGgtacagatga ... tgttctgtagGTTATATTTGTCGACGCAGATCAAATTATAAGGACAGACATGGGAGAAC
EST: gi|125045535|gb|EL117804.1|EL117804
EST:     CTCATTGGAAAAG                         GTTATATTTGTCGACGCAGATCAAATTATAAGGACAGACATGGGAGAACTG
genomic: CTCATTGGAAAAGgtacagatga ... tgttctgtagGTTATATTTGTCGACGCAGATCAAATTATAAGGACAGACATGGGAGAACTG