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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAAACGAACAAAGTATATTTGCGAGATACAACCATTGTTTCTCCTTTCTCTATTCTACTTTTTGGCGGCTCAATCAATGTTCATCATCAGgtacagttagccatatcgtgttctctcgctgttagcaaaacaaagatgaaatattctgcttattcgttgattttatctgttctttaccttaaaaaccttacctttcattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G58060.1
intron # 32
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G58060.1 (Arabidopsis thaliana), 5'ss of exon 32
lower sequence: Vv12s0035g00800.t01 (Vitis vinifera), 5'ss of exon 30
GTGGAAACGAACAAAGTATATTTGCGAGATACAACCATTGTTTCTCCTTTCTCTATTCTACTTTTTGGCGGCTCAATCAATGTTCATCATCAGgta-cagttagccatatcgtgttctctcgctgtt-agcaaaacaaagatgaaatattctgcttattcgttgattttatctgttctttaccttaaaaaccttacctttcattgcag
|| ||||| || ||||||| | | || |||||||||||  | ||||| | ||||||| | || ||||| ||||| ||||||||||| ||||||||| |  ||  |  |  ||| |||||||    || |   |    ||   | | | |      |  |  ||| ||| || |    ||    | ||| |   |              
GTTGAAACCAATAAAGTATTTCTTCGGGATACAACCATCATCTCTCCATACTCTATTTTGCTGTTTGGTGGCTCCATCAATGTTCAGCATCAGgtaaccattttctgt-ccgtcttctctcagcattcaagtatgtcaattggtagtgtagatgctgataattgttttaatataaggttatgttaaaagaatgt--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116441496|gb|EG484088.1|EG484088
EST:     CTCCTTTCTCTATTCTACTTTTTGGCGGCTCAATCAATGTTCATCATCAG                         AGTGGATCAGTCACTATTGATGGGTGGTTAAAGGTAGCAGCACCAGCTCAA
genomic: CTCCTTTCTCTATTCTACTTTTTGGCGGCTCAATCAATGTTCATCATCAGgtacagttag ... ttcattgcagAGTGGATCAGTCACTATTGATGGGTGGTTAAAGGTAGCAGCACCAGCTCAA
EST: gi|116481020|gb|EG523612.1|EG523612
EST:     CTCCTTTCTCTATTCTACTTTTTGGCGGCTCAATCAATGTTCATCATCAG                         AGTGGATCAGTCACTATTGATGGGTGGTTAAAGGTAGCAGCACCAGCTCAA
genomic: CTCCTTTCTCTATTCTACTTTTTGGCGGCTCAATCAATGTTCATCATCAGgtacagttag ... ttcattgcagAGTGGATCAGTCACTATTGATGGGTGGTTAAAGGTAGCAGCACCAGCTCAA
EST: gi|19740787|gb|AU226140.1|AU226140
EST:     TTCTACTTTTT-GCGGCTCAATCAATGTTCATCATCAG                         AGT-GATCAGTCACTATTGATGGGTGGTTAAAGGTAGCAGCACCAGCTCAA
genomic: TTCTACTTTTTGGCGGCTCAATCAATGTTCATCATCAGgtacagttag ... ttcattgcagAGTGGATCAGTCACTATTGATGGGTGGTTAAAGGTAGCAGCACCAGCTCAA