Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGTAAGCCTCACGCAGATCGTGTCTCTAACATAGCGTGGGCAAAGAATGGGCAGGCTTTGCTCTATGTCGTTACTGATCAGAAAAAACGGCCATGCAGgtttcgtatgatcagttttggttgttaggttcttccaaaaatggcctgtatgaatctttttcttttgttctgttatcag

Basic information

species Arabidopsis thaliana
transcript AT5G66960.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66960.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G26000.1 (Glycine max), 5'ss of exon 2
GTAGTAAGCCTCACGCAGATCGTGTCTCTAACATAGCGTGGGCAAAGAATGGGCAGGCTTTGCTCTATGTCGTTACTGATCAGAAAAAACGGCCAT----GCAGgtttcgtatgatcagtt--ttggttgttaggttct---------tccaaaaatggcctgtatgaatctttttcttttgttctgttatcag------
| ||||||||||| || ||||| || || ||| | |||||||| ||| |||| ||||||||||| ||||| || || ||| ||||||   |||| |    |  |||    | |  |   |   ||||| | | ||| ||         |  ||| | || |   ||  || |     |  |    || | | ||      
GCAGTAAGCCTCAGGCGGATCGAGTTTCCAACCTGGCGTGGGCCAAGGATGGACAGGCTTTGCTTTATGTTGTGACGGATAAGAAAATGAGGCCTTACCGgtgggtgaattgttgttgatctattggtggcttggtgctgtaatagaattgaaagaagggcaaaatttatatacggttccttggatgcttttagtgatgt