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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtactgttcgttggttaggctcaataatctgacttgtttggttggttaggctcaataatcttgtcctgtgattggaatcacag

Basic information

species Arabidopsis thaliana
transcript AT5G66600.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116429915|gb|EG472507.1|EG472507
EST:     CAAAGCATAATCAATATCATTCAACCACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
genomic: CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
EST: gi|116429913|gb|EG472505.1|EG472505
EST:     CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
genomic: CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
EST: gi|116429900|gb|EG472492.1|EG472492
EST:     CAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
genomic: CAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
EST: gi|116429923|gb|EG472515.1|EG472515
EST:     CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
genomic: CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
EST: gi|116429925|gb|EG472517.1|EG472517
EST:     CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
genomic: CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
EST: gi|116429918|gb|EG472510.1|EG472510
EST:     CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
genomic: CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
EST: gi|116429924|gb|EG472516.1|EG472516
EST:     CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
genomic: CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
EST: gi|116429922|gb|EG472514.1|EG472514
EST:     CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
genomic: CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
EST: gi|116429926|gb|EG472518.1|EG472518
EST:     CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGT
genomic: CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGT
EST: gi|116429914|gb|EG472506.1|EG472506
EST:     CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
genomic: CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
EST: gi|116429904|gb|EG472496.1|EG472496
EST:     CAAAGCATAACCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
genomic: CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
EST: gi|116429902|gb|EG472494.1|EG472494
EST:     CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTTGTTGTGCA
genomic: CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
EST: gi|116429907|gb|EG472499.1|EG472499
EST:     CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
genomic: CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
EST: gi|116429919|gb|EG472511.1|EG472511
EST:     CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
genomic: CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
EST: gi|116429916|gb|EG472508.1|EG472508
EST:     CAAAGCATAATCAATATCATTCAACCACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
genomic: CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
EST: gi|116429909|gb|EG472501.1|EG472501
EST:     CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAG                         ATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA
genomic: CAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtac ... ggaatcacagATTACTCACCTCGAGACAAGATTACAAGATCAGTTTAAGGTTCGTTGTGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACATGGGACGTTCAAATGAATCAAAGCATAATCAATATCATTCAAACACGGAGACTTCATTGAAGCAAGAGgtatgtgtactgttcgttggttaggctcaataatctgacttgtttggttggttaggctcaataatcttgtcctgtgattggaatcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA