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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACAGGTTAGATACAATGATGATGAAGAATGTCAGAGATGCTGCCATCAATGCGGACTGCGTAGTAATTCTTGTTGATGCTTGTAAAACGCCTACTAATgtatgcttctctgtttgatttgtttctcatgctttgttagtttagtttcctgtcctaatttctggtgttgtgtgcttag

Basic information

species Arabidopsis thaliana
transcript AT5G66470.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66470.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv04s0023g02120.t01 (Vitis vinifera), 5'ss of exon 3
GCACAGGTTAGATACAATGATGATGAAGAATGTCAGAGATGCTGCCATCAATGCGGACTGCGTAGTAATTCTTGTTGATGCTTGTAAAACGCCTACTAATgtatgcttctctgtttg--atttgtttctcatgctttgttagtt----tagtttcctgtcctaatttctggtgttgtgtgcttag
||||| ||| ||  | |||||||||||||||||| |   |||| |||| ||||||||||| |||||  ||||||||||||| |||||    ||    || ||||| |||| ||||||  |    ||| ||  ||||| ||| ||    ||  ||  | | ||  |  || |              
GCACAAGTTGGACTCCATGATGATGAAGAATGTCCGCAGTGCTACCATTAATGCGGACTGTGTAGTGGTTCTTGTTGATGCATGTAAGGAACCCCAAAAGgtatggttctttgtttgggaaacatttttcgggctttcttacttctgctaaatttattttcttttccctag--------------