Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCTCAGGCTTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaataatccctctaacaactaactaaataatgatttacaaaatgatcttctcttatctggaaatggatccttttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G66190.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os06g01850.1 (Oryza sativa), 5'ss of exon 2
AGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCTCAGGCTTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaag--caaataatccctctaacaactaactaaat---aatgatttaca---aaatgatcttctcttatctggaaatggatccttttgcag------------
 || ||  | || ||  | ||||||||||| |||||||||||||||||||| ||||| ||||| || || ||  | || ||||| || |||||||||||||| ||  |   |  || ||    |  || | | |||   | |  ||  ||    |  ||||| || |  ||     |   |  | | | ||             
CGTCATCGCCGACGGCGTCGACAAGAACGGCAAGCCGCACAAGCTCAGGCTCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACCgtcagtccccctcttctcttctcctccttattcaatctcattccttctcatcggatcgatctcctttcttcacaccagataatcatcttcacttgtacctctag

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os02g01340.2 (Oryza sativa), 5'ss of exon 1
AGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCTCAGGCTTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaa---gcaaataatccctctaacaactaactaaataatgatttacaaaatgatcttctcttatctggaaatggatccttttgcag-------
 || || || || || || ||||||||||| ||||| ||||||||| | || ||||| ||||| || || ||||| || ||||| |  ||||||||||| ||||   || | || |   | |        |   |          |  | |||| ||   || |  | || || |  |||  |  |        
CGTCATCCCCGACGGCATCGACAAGAACGGCAAGCCCCACAAGCTCCGCCTCTACTCCATCGCCAGCAGCGCCATCGGGGACTTCGCCGACTCCAAGACGgtaactagctagtagtgtttttcttgctccatcgatctcaaccacaagacatgagctaa-ctaacatcgacatcgtccctgatcgatcgatcag

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G059191_T01 (Zea mays), 5'ss of exon 2
AGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCTCAGGCTTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaataatccctctaacaact-------aactaaataatgatttacaaaat---gatcttctcttatctggaaatggatccttttgcag------
  | ||  | || ||   |||||||||||| |||||||||||||||||||| ||||| ||||| || || ||| | || || || || ||||||||||| || ||  |  |       |     ||       | ||    |  | ||||||||       | |  | || |    ||||    | | |   |       
CATCATCGCTGATGGCGAAGACAAGAACGGCAAGCCGCACAAGCTCAGGCTATACTCCATCGCCAGCAGCGCCCTCGGAGATTTCGGCGACTCCAAGACGgtcagtcatcacctagcttgcttgcttcacggaacctttgcatggttttacaaatcctctgtatattattgttcataaataatccgtatcaaacaaaacg

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G168143_T02 (Zea mays), 5'ss of exon 2
AGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCTCAGGCTTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat----aatccctctaac---aactaactaaataatgatttacaaaatgatcttctcttatctg--gaaatggatccttttgcag
 || ||  | || ||  | ||||||||||| |||||||||||| ||||||| ||||| ||||| || || || || || ||||| || ||||||||||| || || |  |    |||| |||   |     ||  ||   | | |  | |    |  ||  ||  | || |     |     ||    |||||
CGTCATCGCCGATGGCGTCGACAAGAACGGCAAGCCGCACAAGGTCAGGCTCTACTCCATCGCCAGCAGCGCGATCGGCGACTTCGGCGACTCCAAGACAgtcagtagctagccaatctctcctgctttctctctctctctcaagtctgaatcgactattctccgtcattttcttgagcatttctgcctgcag

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G059083_T02 (Zea mays), 5'ss of exon 2
AGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCTCAGGCTTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaataatccctctaacaactaactaaataatgatttacaaaatgatcttctcttatctggaaatggatccttttgcag--------
 || ||  | || ||    ||||||||||| |||||||||||||||||||| ||||| ||||| || || ||| | || || || || ||||||||||| || ||| ||| ||   |  ||  | ||| ||| |||| || |  |     |||  |  | |  | |  ||||   ||||||  |        
CGTCATCGCGGATGGCGAGGACAAGAACGGCAAGCCGCACAAGCTCAGGCTCTACTCCATCGCCAGCAGCGCCCTCGGAGATTTCGGCGACTCCAAGACGgtgagccaatgattaatacaa--attaattaattaattatatgtatgt--atcaccattaagatagctatggcaacttttgttgatgtgcag

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv04s0023g03510.t01 (Vitis vinifera), 5'ss of exon 3
AGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCTCAGGCTTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaataatccctctaacaactaactaaataatgatttacaaaatgatcttctcttatctgg--aaatggatccttttgcag---------------
 || ||| |||| ||  | |||||||| |||||||| |||||||| ||  | ||||| || || || |||||| |||||||||||||||||||||| || ||||||   | | |   | ||  | |  |    |    | ||| |  ||       |  ||| |     |||||    || |  ||               
GGTAATTGCAGATGGTGTTGACAAGAATGGGAAGCCTCACAAGCTGAGATTGTACTCAATTGCAAGCAGTGCCCTTGGTGACTTTGGAGACTCCAAAACTgtaagcctttta-cttccaaatgatttgcactttccatagttataggattgcagcatagtatataattgaatggggttttctcaagtctgtatgatttata

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv18s0001g14450.t01 (Vitis vinifera), 5'ss of exon 3
AGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCTCAGGCTTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaataatccc----tctaacaactaactaaataatgatttaca------aaatgatcttctcttatctggaa---atggatccttttgcag-------------------------------------------------------------------------------------------
 |||||||| || || ||||||||||| ||||| || |||||||| || || |||||||| || ||||||||  |||| |||||||| ||| | || || ||||| |  |  ||      |    ||  |  |||  | || |||| |       | | | || |   | ||    |    |||   ||||||                                                                                               
TGTGATTCCGGATGGTATAGACAAGAATGGGAAACCCCACAAGCTTAGACTCTACTCTATTGCCAGTAGTGCTCTTGGAGACTTTGGGGACACAAAAACTgtaaggatttgttcataaaattgtgcatttttctactttatcatttccttttgttagaagctcctgaatcattcaaacctcatgctgcctttttggacattctatgtttgggaacctgccgttgttatgaatatgctgagcgatcatccttgtcatttgaattgacctgggtaagtgcgttttggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86051155|gb|DR346910.1|DR346910
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125031213|gb|EL103482.1|EL103482
EST:     AGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: AGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125161048|gb|EL188346.1|EL188346
EST:     GACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: GACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125215743|gb|EL229827.1|EL229827
EST:     CTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: CTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124919950|gb|EH993688.1|EH993688
EST:     CTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: CTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125276287|gb|EL290372.1|EL290372
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGA
EST: gi|86051164|gb|DR346919.1|DR346919
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTCAGTTTACACA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACT-AGTTTACACA
EST: gi|125272507|gb|EL286592.1|EL286592
EST:     TTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAAATGATGGCGGAGAGAT
genomic: TTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAA-TGATGGCGGAGAGAT
EST: gi|124965691|gb|EL039858.1|EL039858
EST:     TTACTCTATCGCGTAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAA
genomic: TTACTCTATCGCG-AGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAA
EST: gi|164016842|gb|ES114970.1|ES114970
EST:     TCGCCAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125023279|gb|EL095548.1|EL095548
EST:     AGTAGTGCCATTGGTGACTTTGGAGACTTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGAT
genomic: AGTAGTGCCATTGGTGACTTTGGAGAC-TCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGAT
EST: gi|125319858|gb|EL333943.1|EL333943
EST:     TGCCATTGGTGACTTTGGAGACTCCAAGACC                         G-TTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124763004|gb|EH853134.1|EH853134
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAG
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAG
EST: gi|125010605|gb|EL082874.1|EL082874
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTA
EST: gi|125217054|gb|EL231137.1|EL231137
EST:     TGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124884255|gb|EH963157.1|EH963157
EST:     AGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAG
genomic: AGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAG
EST: gi|124768982|gb|EH859112.1|EH859112
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAAACC                         GTTTCTCTCTGTGTCAAGAG
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAG
EST: gi|124923251|gb|EL001463.1|EL001463
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAG
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAG
EST: gi|125250753|gb|EL264838.1|EL264838
EST:     TGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125215898|gb|EL229981.1|EL229981
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GATTCTCTCTGTGT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGT
EST: gi|124814684|gb|EH899550.1|EH899550
EST:     AGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: AGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|86051165|gb|DR346920.1|DR346920
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTC
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTC
EST: gi|124966814|gb|EL040892.1|EL040892
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGA
EST: gi|125073250|gb|EL137654.1|EL137654
EST:     ACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: ACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124714176|gb|EH805578.1|EH805578
EST:     TCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124738346|gb|EH829690.1|EH829690
EST:     GTGCCATTGGTGACTTTGGGGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: GTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125002239|gb|EL074508.1|EL074508
EST:     TTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125141517|gb|EL179018.1|EL179018
EST:     TAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124920854|gb|EH994530.1|EH994530
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125238886|gb|EL252971.1|EL252971
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACA
EST: gi|125135305|gb|EL175701.1|EL175701
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACNCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGT
EST: gi|125297901|gb|EL311986.1|EL311986
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGT
EST: gi|124779912|gb|EH869855.1|EH869855
EST:     GGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: GGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124830273|gb|EH914729.1|EH914729
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTGCACAAATGATGGCG
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCG
EST: gi|124762106|gb|EH852236.1|EH852236
EST:     GGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: GGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125203417|gb|EL218371.1|EL218371
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATG
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATG
EST: gi|124978620|gb|EL051772.1|EL051772
EST:     TGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124857058|gb|EH941495.1|EH941495
EST:     TGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125209311|gb|EL224265.1|EL224265
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAA
EST: gi|86051157|gb|DR346912.1|DR346912
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTC
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTC
EST: gi|124904949|gb|EH979029.1|EH979029
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAA
EST: gi|124971157|gb|EL044943.1|EL044943
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGG
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGG
EST: gi|124925021|gb|EL003053.1|EL003053
EST:     CTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACAACAAATGATGGCGGAGAGAT
genomic: CTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACA-CAAATGATGGCGGAGAGAT
EST: gi|86051162|gb|DR346917.1|DR346917
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125015255|gb|EL087524.1|EL087524
EST:     TACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCA
genomic: TACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCA
EST: gi|125032363|gb|EL104632.1|EL104632
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGNGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACA
EST: gi|125194621|gb|EL209575.1|EL209575
EST:     GAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: GAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124899885|gb|EH974503.1|EH974503
EST:     TGACTTTGGTGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125074339|gb|EL138314.1|EL138314
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAAACC                         GTTTCTCTCTGTGTCAAGAG
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAG
EST: gi|124788203|gb|EH877882.1|EH877882
EST:     TGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125060178|gb|EL128855.1|EL128855
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTC
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTC
EST: gi|124957951|gb|EL032733.1|EL032733
EST:     GTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: GTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|86051160|gb|DR346915.1|DR346915
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124746070|gb|EH836570.1|EH836570
EST:     TTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|86051158|gb|DR346913.1|DR346913
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125214713|gb|EL229029.1|EL229029
EST:     TGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACA
genomic: TGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACA
EST: gi|124901653|gb|EH975733.1|EH975733
EST:     GGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: GGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125302493|gb|EL316578.1|EL316578
EST:     TAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         G-TTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|125095154|gb|EL152393.1|EL152393
EST:     AGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: AGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|86078472|gb|DR374229.1|DR374229
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|86051163|gb|DR346918.1|DR346918
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|47829213|gb|CK118897.1|CK118897
EST:     TTTACTCTATCGCCAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATT
EST: gi|124772078|gb|EH862207.1|EH862207
EST:     TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACC                         GTTTCTCTCTGTGTCAAGAGACTA-TTTACACAAATGATGGCGGAGAGA
genomic: TTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaat ... ccttttgcagGTTTCTCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCTCAGGCTTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCgtaagcaaataatccctctaacaactaactaaataatgatttacaaaatgatcttctcttatctggaaatggatccttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA