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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTGGAGGCGGTGTGATAGGCGATATGTGTGGATATGCTGCTGCATCGTACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAGgtacatttttcacttcactgtaggaatttcttgtctaaaatcattaacatccagaaaaaaggttttttatttctcgctgcaattcatttaattgccctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G66120.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66120.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA01G36890.1 (Glycine max), 5'ss of exon 3
CCTTGGAGGCGGTGTGATAGGCGATATGTGTGGATATGCTGCTGCATCGTACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAGgtacatttttcacttcactgtaggaatttctt----------gtcta--aaatcattaaca--tccagaaaa----aaggttttttatttctcgctgcaattcattta-attgccctgcag--------------------------------
 ||||| || |||||||| ||||| |||||||| | ||||||||| | || |||||||||||| ||||| || || |||||||||||||| ||||| ||||| | |||    ||    |  |  ||| | ||          || ||  | | | ||      ||  |  ||    || | || |  | ||| |||       || ||  ||  ||                                     
TCTTGGTGGTGGTGTGATTGGCGACATGTGTGGCTGTGCTGCTGCTTTGTTCCTACGTGGTGTTAATTTTATTCAGATTCCTACCACTGTGATGGCCCAGgt-cttttgctgctcttttaaaaaaatattttcatgatatgtgtttattagaccttttgtggctctggctaatgttaatggttctagtctctggctctctgctatctatgttatcccattccctgttcattgggttgtgtattatgttcccag

upper sequence: AT5G66120.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G08350.1 (Glycine max), 5'ss of exon 3
CCTTGGAGGCGGTGTGATAGGCGATATGTGTGGATATGCTGCTGCATCGTACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAGgtacatttttcacttcactgtaggaatttcttgtctaaaatcattaacatccagaaaaaaggttttttatttctcgctgcaattcatttaattgccctgcag-----------------------------------------------------------
 ||||| || |||||||| ||||| |||||||| | ||||||  |  | | |||||||||||| ||||| || || |||||||| ||||| |||||||||||   |||| |   ||  | ||| || || || ||   |    ||   ||       | |  |||| |   ||| |||    || ||     |   ||   |                                                           
TCTTGGTGGTGGTGTGATTGGCGACATGTGTGGCTTTGCTGCCTCTGCCTTCCTACGTGGTGTTAATTTTATTCAGATTCCTACAACTGTGATGGCACAGgtc--ttttgctgctctttttagaaaattattttcatgatatgtttttatt------agaccttttgtggctctggctaatgttaatggttctagtctctggctctctgctatctatgttatcccattccctgttcattaggttgtgtattatgttcccag

upper sequence: AT5G66120.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv04s0023g03820.t01 (Vitis vinifera), 5'ss of exon 3
CCTTGGAGGCGGTGTGATAGGCGATATGTGTGGATATGCTGCTGCATCGTACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAGgtacatttt---tcacttcac---tgtaggaatttcttgtctaaaatcattaacatccaga--aaaaaggttttttat-ttctcgctgcaattcatttaattgccctgcag
| |||| || ||||| || || || |||||||||| |||||||||  | | ||| |||||||| |||||||| || |||||||| ||||| ||||||||||||  | ||   ||||  |||   | |||     ||||| ||    |      | ||  |   | || || |    |  ||||  ||    | |   ||||          
CGTTGGTGGTGGTGTTATTGGTGACATGTGTGGATTTGCTGCTGCTGCCTTCCTTCGTGGTGTTAATTTCATTCAGATTCCTACAACTGTAATGGCACAGgtatgtcttaaatcacagcacctttttagctggctcttg-ctccctttgcatgcttcaggtgtacaagggctggacaccttctttcttaggtgctcctaat----------

upper sequence: AT5G66120.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S37_309V6.1 (Physcomitrella patens), 5'ss of exon 2
CCTTGGAGGCGGTGTGATAGGCGATATGTGTGGATATGCTGCTGCATCGTACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAGgtacatttttcacttcactgtaggaatttcttgtctaaaatcattaacatccagaaaaaaggttttttatttctcgctgcaattcatttaattgccctgcag------
  | ||||| || || || || || |||||||| ||||||||||| || || || |||||||||||||| ||||| |||||||| ||  | |||||||||||  | |  | | |||  |     ||   |     ||   |  ||    |  |  | ||     ||||   ||| ||  |  |  ||||    ||   |         
ATTGGGAGGTGGAGTAATCGGGGACATGTGTGGTTATGCTGCTGCTTCTTATCTTCGTGGTGTCAATTTTATCCAGATTCCTACGACCCTCATGGCACAGgttgaatcatgatttccttt----aaccccgaacgtatgtttcttccagtatatgataa----ctttttgctcttgcaaccttgtatttttcagcgtcgagattctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116478278|gb|EG520870.1|EG520870
EST:     ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTTTTATGGCACAG                         GTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
genomic: ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAGgtacattttt ... tgccctgcagGTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
EST: gi|116421947|gb|EG464539.1|EG464539
EST:     ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAG                         GTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
genomic: ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAGgtacattttt ... tgccctgcagGTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
EST: gi|116450338|gb|EG492930.1|EG492930
EST:     ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAG                         GTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
genomic: ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAGgtacattttt ... tgccctgcagGTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
EST: gi|116421951|gb|EG464543.1|EG464543
EST:     ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAG                         GTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
genomic: ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAGgtacattttt ... tgccctgcagGTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
EST: gi|125029405|gb|EL101674.1|EL101674
EST:     TACCACTGTTATGGCACAG                         GTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
genomic: TACCACTGTTATGGCACAGgtacattttt ... tgccctgcagGTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
EST: gi|116421921|gb|EG464513.1|EG464513
EST:     ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAG                         GTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
genomic: ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAGgtacattttt ... tgccctgcagGTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
EST: gi|116450349|gb|EG492941.1|EG492941
EST:     ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAG                         GTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
genomic: ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAGgtacattttt ... tgccctgcagGTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
EST: gi|116472855|gb|EG515447.1|EG515447
EST:     ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAG                         GTTGATTCTTCTGTAGGTGGCAAAACGGGCATAAATCATCGTCTTGGAAAG
genomic: ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAGgtacattttt ... tgccctgcagGTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
EST: gi|116421964|gb|EG464556.1|EG464556
EST:     ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAG                         GTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG
genomic: ACCTACGTGGTGTCAATTTCATCCAAATTCCTACCACTGTTATGGCACAGgtacattttt ... tgccctgcagGTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAATCATCGTCTTGGAAAG