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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATGGCAAAGGAGATAGAGAACAAAGAGTTAATCTTTGGTTCGACCCATCTATGGATTACCACACTTACACTATCTTATGGTCACACAAACACATTGTgtaagcttttctctaattgtactttcaactagaatcaacatttactgtttcaaaacaaaaaatcaccatttactgtttaaaaaaaccttagtttaacgtggggttgttttggttactcag

Basic information

species Arabidopsis thaliana
transcript AT5G65730.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124989165|gb|EL061501.1|EL061501
EST:     TCTATGGATTACCACACTTACACTATCTTATGGTCACACAAACACATTGT                         TTTTT-CGTAGACGATGTGCCAATAAGAGAATAC
genomic: TCTATGGATTACCACACTTACACTATCTTATGGTCACACAAACACATTGTgtaagctttt ... ggttactcagTTTTTACGTAGACGATGTGCCAATAAGAGAATAC
EST: gi|125088476|gb|EL147217.1|EL147217
EST:     CTATGGATTACCACACTTACACTATCTTATGGTCACACAAACACATTTGT                         TTTTTACGTAGACGAT
genomic: CTATGGATTACCACACTTACACTATCTTATGGTCACACAAACACATT-GTgtaagctttt ... ggttactcagTTTTTACGTAGACGAT
EST: gi|124818759|gb|EH903625.1|EH903625
EST:     TCTATGGATTACCACACTTACACTATCTTATGGTCACACAAACACATTGT                         TTTTTACGTAGACGATGTGCCAATAAGAGAATAC
genomic: TCTATGGATTACCACACTTACACTATCTTATGGTCACACAAACACATTGTgtaagctttt ... ggttactcagTTTTTACGTAGACGATGTGCCAATAAGAGAATAC
EST: gi|125049737|gb|EL122006.1|EL122006
EST:     TCTATGGATTACCACACTTACACTATCTTATGGTCACACAAACACATTGT                         TTTT-ACGTAGACGA
genomic: TCTATGGATTACCACACTTACACTATCTTATGGTCACACAAACACATTGTgtaagctttt ... ggttactcagTTTTTACGTAGACGA