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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAATGGAGAGATATACAACCACAAGATTTTGCGTGAAAAGCTTAAGTCTCATCAGTTCCGTACTGGTAGTGACTGTGAAGTGATTGCACATCTTgtaagtatccgttattgggaaaagactgattttttgtttctggatttccatcttttggactttttttttttgcatagatctgaatttggccaattagtgaagaagtaactgagcatatctctgttgttgaatcttatgtcttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G65010.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G65010.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G38130.1 (Glycine max), 5'ss of exon 3
GTAAATGGAGAGATATACAACCACAAGATTTTGCGTGAAAAGCTTAAGTCTCATCAGTTCCGTACTGGTAGTGACTGTGAAGTGATTGCACATCTTgtaagtatccgttattgggaaaagactgattttttgtttctggatttccatcttttggactttttttttttgcatagatctgaatttggccaattagtgaagaagtaactgagcatatctctgttgttgaatcttatgtcttgcag
|||||||| ||||||||||| ||||||   ||| |  | || || |  || ||||| || || ||||||||||| |||||||||||||| |||||||||||| |  |  | |  |  |    || |  |   |||   | |||||      |  |   || ||      |   ||   |||||  |     ||                                                 
GTAAATGGGGAGATATACAATCACAAGCAATTGAGACAGAAACTGAGTTCCCATCAATTTCGAACTGGTAGTGATTGTGAAGTGATTGCCCATCTTgtaagtgtttgagaatcagctagatttggtaatcaatttactgttttcc----cataaa---ttattaaaaaaaattattgtaatttatcatgccag-------------------------------------------------

upper sequence: AT5G65010.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G02060.1 (Glycine max), 5'ss of exon 3
GTAAATGGAGAGATATACAACCACAAGATTTTGCGTGAAAAGCTTAAGTCTCATCAGTTCCGTACTGGTAGTGACTGTGAAGTGATTGCACATCTTgtaagtatccgttattgggaaaagactgattttttgttt-ctggatttccat---cttttggactttttttttttgcatagatctgaatttggccaattagtgaagaagtaactgagcatatctctgttgttgaatcttatgtcttgcag
|||||||| ||||||||||| ||||||   ||| |  | || || |  || ||||| || || ||||||||||| |||||||||||||| |||||||||||| |  || | |  |  |    || |  |   ||  |||  || ||||    | ||  |||| |||||||    ||  | | |  |  |                                                         
GTAAATGGGGAGATATACAATCACAAGCAATTGAGGCAGAAACTGAGTTCCCATCAATTTCGAACTGGTAGTGATTGTGAAGTGATTGCCCATCTTgtaagtgtttgtgaatcagttagatttggtaatcaattcactgttttcccataaattattaaacttgtttttttattgtaattatcatgtcag---------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164168756|gb|ES161081.1|ES161081
EST:     AGTCTCATCAGTTCCGTACTGGTAGTGACTGTGAAGTGATTGCACATCTT                         TACGAAGAACATGGAGAGGAATTTA
genomic: AGTCTCATCAGTTCCGTACTGGTAGTGACTGTGAAGTGATTGCACATCTTgtaagtatcc ... tgtcttgcagTACGAAGAACATGGAGAGGAATTTA
EST: gi|47829835|gb|CK119519.1|CK119519
EST:     AGTCTCATCAGTTCCGTACTGGTAGTGACTGTGAAGTGATTGCACATCTT                         TACGAAGAACATGGAGAGGAATTTATCGACATGTTGGATGGAATGTTCGCG
genomic: AGTCTCATCAGTTCCGTACTGGTAGTGACTGTGAAGTGATTGCACATCTTgtaagtatcc ... tgtcttgcagTACGAAGAACATGGAGAGGAATTTATCGACATGTTGGATGGAATGTTCGCG
EST: gi|125015409|gb|EL087678.1|EL087678
EST:     ATCAGTTCCGTACTGGTAGTGACTGTGAAGTGATTGCACATCTT                         TACGAAGAACATGGAGAGGAATTTATCGACATGTTGGATGGAAT
genomic: ATCAGTTCCGTACTGGTAGTGACTGTGAAGTGATTGCACATCTTgtaagtatcc ... tgtcttgcagTACGAAGAACATGGAGAGGAATTTATCGACATGTTGGATGGAAT
EST: gi|125184560|gb|EL199514.1|EL199514
EST:     TAGTGACTGTGAAGTGATTGCACATCTT                         TACGAAGAACATGGAGAGGAATTTATCGACATGTTGGATGGAATGTTCGCG
genomic: TAGTGACTGTGAAGTGATTGCACATCTTgtaagtatcc ... tgtcttgcagTACGAAGAACATGGAGAGGAATTTATCGACATGTTGGATGGAATGTTCGCG