1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATCCATGGTGCAACAAGCAATGCAGTATATTGATCAGACACTAGACATAGAAACTCGGATTGAGCTTATTAAGACTCTAAACAATGTAGCTGCTGGAAAGgtgcggattagagttggctattgttgttgttgttgtagttatatttgcttgaatcttgatcactccgtgcaagtttttttcttgatgaatatgtgtgtgtgagcatgtgtag
species | Arabidopsis thaliana |
transcript | AT5G64760.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAACTCGGATTGAGCTTATTAAGACTCTAAACAATGTAGCTGCTGGAAAG ATATATGTCGAAATCGAGAGAGCTCGTTTGACCAAGATGCTTGCTAAGATTEST: gi|163984632|gb|ES097171.1|ES097171
genomic: AAACTCGGATTGAGCTTATTAAGACTCTAAACAATGTAGCTGCTGGAAAGgtgcggatta ... gcatgtgtagATATATGTCGAAATCGAGAGAGCTCGTTTGACCAAGATGCTTGCTAAGATT
EST: AGCTTATTAAGACTCTAAACAATGTAGCTGCTGGAAAG ATATATGTCGAAATCGAGAGAGCTCGTTTGACCAAGATGCTTGCTAAGATTEST: gi|86044899|gb|DR340654.1|DR340654
genomic: AGCTTATTAAGACTCTAAACAATGTAGCTGCTGGAAAGgtgcggatta ... gcatgtgtagATATATGTCGAAATCGAGAGAGCTCGTTTGACCAAGATGCTTGCTAAGATT
EST: AAACTCGGATTGAGCTTATTAAGACTCTAAACAATGTAGCTGCTGGAAAG ATATATGTCGGAAATCGAGAGAGCTCGTTTGA
genomic: AAACTCGGATTGAGCTTATTAAGACTCTAAACAATGTAGCTGCTGGAAAGgtgcggatta ... gcatgtgtagATATATGTCG-AAATCGAGAGAGCTCGTTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCATGGTGCAACAAGCAATGCAGTATATTGATCAGACACTAGACATAGAAACTCGGATTGAGCTTATTAAGACTCTAAACAATGTAGCTGCTGGAAAGgtgcggattagagttggctattgttgttgttgttgtagttatatttgcttgaatcttgatcactccgtgcaagtttttttcttgatgaatatgtgtgtgtgagcatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA