1 5' 3' | 2 5' 3' | 3 5' 3' |
TTCTGTGTTACACTTGGATCGGGAACACACGCCTTCACGCTAGACCATTCCACAGGAGAATTTGTTCTTACCCATCAAAACATCAAGATCCCAACTCGGGgtaaaaagcgtctaatgacacatatgacttgatccattgcgacattcctattcatggctctgaacaacctgcattaatcgttgttttttgtatgatcaacaatag
species | Arabidopsis thaliana |
transcript | AT5G64380.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCCCAACTCGGG GACAAATCTACTCAGTGAACGATGCGAGGTACTTTGATTGGCCAGAAGGTTEST: gi|125326333|gb|EL340413.1|EL340413
genomic: ATCCCAACTCGGGgtaaaaagcg ... tcaacaatagGACAAATCTACTCAGTGAACGATGCGAGGTACTTTGATTGGCCAGAAGGTT
EST: CACAGGAGAATTTGTTCTTACCCATCAAAACATCAAGATCCCAACTCGGG GACAAATCTACTCAGTGEST: gi|86086542|gb|DR382301.1|DR382301
genomic: CACAGGAGAATTTGTTCTTACCCATCAAAACATCAAGATCCCAACTCGGGgtaaaaagcg ... tcaacaatagGACAAATCTACTCAGTG
EST: CACAGGAGAATTTGTTNTTACCCATCAAAACATCAAGATCCCAACTCGGG G-CAAATCTACTCAGTGAACGATGCGAGGTACTTTGATTGGCCAGAAGGTTEST: gi|86074496|gb|DR370253.1|DR370253
genomic: CACAGGAGAATTTGTTCTTACCCATCAAAACATCAAGATCCCAACTCGGGgtaaaaagcg ... tcaacaatagGACAAATCTACTCAGTGAACGATGCGAGGTACTTTGATTGGCCAGAAGGTT
EST: CACAGGAGAATTTGTTCTTACCCATCAAAACATCAAGATCCCAACTCGGG GACAAATCTACTCAGTGAACGATGCGAGGTACTTTGATTGGCCAGAAGGTT
genomic: CACAGGAGAATTTGTTCTTACCCATCAAAACATCAAGATCCCAACTCGGGgtaaaaagcg ... tcaacaatagGACAAATCTACTCAGTGAACGATGCGAGGTACTTTGATTGGCCAGAAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGTGTTACACTTGGATCGGGAACACACGCCTTCACGCTAGACCATTCCACAGGAGAATTTGTTCTTACCCATCAAAACATCAAGATCCCAACTCGGGgtaaaaagcgtctaatgacacatatgacttgatccattgcgacattcctattcatggctctgaacaacctgcattaatcgttgttttttgtatgatcaacaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA