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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCAGGAATTCTAGCTGCACTTGCTTTAGCATACAACACCAATCTTTTTGGTGCTTTGACTCATTACAGTAGCGGTCAAGCCGCTGTCTACTATGGAGgtattcccattgattgatgaacatgatagagctctctctttatagctaagtctctttaacttttgcgtttgcttgtgtttctttttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G64290.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G64290.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv03s0017g00640.t01 (Vitis vinifera), 5'ss of exon 3
GTTCCAGGAATTCTAGCTGCACTTGCTTTAGCATACAACACCAATCTTTTTGGTGCTTTGACTCATTACAGTAGCGGTCAAGCCGCTGTCTACTATGGAGgt-attcccattgattgatga--acatgataga-gctctctctttatagctaagtctctttaacttttg---cgtttgcttgtgtttctttttgcag---
|| || ||  | || || ||| |  ||||||| ||||| |||||||||||||||||  | || |||||||| || ||||| || |||||||||||||||||| |  | | ||  |   |    |||||| |     ||| |||       |   ||||||||   ||     |      ||    ||| ||||  |    
GTGCCTGGTGTGCTGGCAGCATTGACTTTAGCTTACAATACCAATCTTTTTGGTGCACTAACACATTACAGCAGTGGTCAGGCTGCTGTCTACTATGGAGgtcagcctctttcctcacttgttacatgaaaagtattctttctacccttttggatctctttatgcttaagaacacacaatttctcttcgttttaaaccac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124707011|gb|EH798413.1|EH798413
EST:     TGGTGCTTTGACTCATTACAGTAGCGGTCAAGCCGCTGTCTACTATGGAG                         CGGGTTATGTTGATCTGCCTGATGTATTCAAGA
genomic: TGGTGCTTTGACTCATTACAGTAGCGGTCAAGCCGCTGTCTACTATGGAGgtattcccat ... ctttttgcagCGGGTTATGTTGATCTGCCTGATGTATTCAAGA
EST: gi|125257354|gb|EL271439.1|EL271439
EST:     CGGTCAAGCCGCTGTCTACTATGGAG                         CGGGTTATGTTGATCTGCCTGATGTATTCAAGATTGGATTCGTGATGGCGA
genomic: CGGTCAAGCCGCTGTCTACTATGGAGgtattcccat ... ctttttgcagCGGGTTATGTTGATCTGCCTGATGTATTCAAGATTGGATTCGTGATGGCGA