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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTTATACTTGGTCTTATGTTTCAACGATTGGGCCAATCTCAAAAGgtacgcttgagctgagggtactctgatgtatcttagaataattatcatcttagtgattttaactgctaggaggttttag

Basic information

species Arabidopsis thaliana
transcript AT5G63200.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63200.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G18330.2 (Glycine max), 5'ss of exon 3
GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTTATACTTGGTCTTATGTTTCAACGATTGGGCCAATCTCAAAAGgtacgcttga-gctgagggtactctgatgtatct------tagaataattatcatcttagtgattttaactgctaggaggttttag
|| ||| |||||||||||||||||||||||||||||||||| || ||||||||||| ||  | ||||  ||| ||||  ||||| ||||||||||||  || |   | |  |   |   || || ||      |   |||  |||  |||      | || | ||  |     ||| ||
GGCTTGGTTCATGTTGCAAGGAAGATGCCCAAAAATGCTCACGCTCATTTTATACTCGGCTTGATGTACCAAAGATTAAGCCAACCTCAAAAGgtactattaataatcactgcttttaaatttacctgttatgtttgatacatatagtctgctcattgttcattg--aaatattttcag

upper sequence: AT5G63200.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA04G36580.1 (Glycine max), 5'ss of exon 3
GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTTATACTTGGTCTTATGTTTCAACGATTGGGCCAATCTCAAAAGgtacgcttgagctgagggtactctgatgtatcttagaataattatcatcttagtgattt--taactgct-----aggaggttttag
|| ||| |||||||||||||||||||||||||||||||||| || ||||||||||| ||  | ||||  ||| ||||  ||||| ||||||||||||  || |       || ||   |  | |    |     || | ||     |  |||  | | || |     |   | ||| ||
GGCTTGGTTCATGTTGCAAGGAAGATGCCCAAAAATGCTCACGCTCATTTTATACTCGGCTTGATGTACCAAAGATTAAGCCAACCTCAAAAGgtacttttaa-taagcagtgcttaaaaatttgcctgttatgttttgatacatatagtttgctcattgttcattgaaatgttttcag

upper sequence: AT5G63200.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv17s0000g09890.t01 (Vitis vinifera), 5'ss of exon 3
GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTTATACTTGGTCTTATGTTTCAACGATTGGGCCAATCTCAAAAGgtacgcttgagctgagggtactctgatgtatcttagaataattatcatcttagtgattttaactgctaggaggttttag-------------
|||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||||  | |||| |||  | ||||| ||  | ||||||||| ||||  |  |   |  |  | || |   |||  ||  ||    ||    | |    |  | ||      |||| |             
GGTTTGGTACATGTAGCAAGGAAGATGCCCAAAAATGCTCATGCTCATTTTATACTTGGATTAATGTATCAGAGGTTGGGTCAGCCACAAAAGgta-gcttttgaagtttgccccattattttggttaatatgcttgctgtcc--atcaccccatttactcattcttttttggtatttattttag