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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGTAGGGATTTGATTGGTATTGCTGAGACTGGCTCTGGTAAGACATTGGCTTACTTGTTACCAGCATTGGTTCACGTTAGTGCACAACCTCGATTAGgtgagtattacagcactatgtgatattctgatttaagctgcattcatttttccggcaacttttttatttgcattgttggggtgtaatatag

Basic information

species Arabidopsis thaliana
transcript AT5G63120.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63120.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G09270.1 (Glycine max), 5'ss of exon 3
AAGGGTAGGGATTTGATTGGTATTGCTGAGACTGGCTCTGGTAAGACATTGGCTTACTTGTTACCAGCATTGGTTCACGTTAGTGCACAACCTCGATTAGgtgagtattacagcactatgtgatattctgatttaagctgcattcatttttccggcaacttttttatttgcattgttggggtgtaatatag
|||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||||| || ||| | || || || || ||||| | ||||||||||||||| |||  |||||  |   |  ||   || ||||    | |||   || |  |||      |   | | ||  |  |  |||  |  |  |  ||
AAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCACAACCTCGATTGGgtatgtattggattcccttgc--taatctgtcagatgctatgtttacctttt--attatggtatgatgggtgtgtttgctgcttttt-cag

upper sequence: AT5G63120.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv17s0000g09130.t01 (Vitis vinifera), 5'ss of exon 3
AAGGGTAGGGATTTGATTGGTATTGCTGAGACTGGCTCTGGTAAGACATTGGCTTACTTGTTACCAGCATTGGTTCACGTTAGTGCACAACCTCGATTAGgtgagtattacagcactatgtgatattctgatttaagctgcattcatttttccggcaacttttttatttgcattgttggggtgtaatatag--------
|||||||| ||||| ||||| ||||| ||||||||||| || ||||| |||||||| ||| | ||||| |||||||| ||||||||||| |||| ||||||| ||||||       ||     | | || ||        |  | | || || |     |||||  ||    || ||  | | |  ||||         
AAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCAGGGAAGACCTTGGCTTATTTGCTTCCAGCTTTGGTTCATGTTAGTGCACAGCCTCCATTAGgttagtattg----gttagcctttttccttataggttgcccccttagttgtctgatctttttttctttattcttttttcgttcttttataattattcag