Sequence
atgc intronic sequence ATGC exonic sequenceGCTGCTTCTGTGGCAGAGGATTATGAAGCTGCTGGAGGTGAAGTGTTGGTTGATGATGAAGATAATGATGGTTGGCTGGCTACACATGGGAAACCGAAAGgtacattttgtatttagagatttgtgcctctgaaattcacttatctcttattcaacttgtgtcttgatttttggccatag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G61500.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G61500.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G36540.1 (Glycine max), 5'ss of exon 3
GCTGCTTCTGTGGCAGAGGATTATGAAGCTGCTGGAGGTGAAGTGTTGGTTGATGATGAAGATAATGATGGTTGGCTGGCTACACATGGGAAACCGAAAGgtacattttgtatttagagatttgtgcctctgaaattcacttatctcttattcaacttgtgtcttgatttttggccatag---------------------
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GCTGCATCTGTTGAAGAAGAATATGAAGCTGCTGGAGGGGAAGTTTTACTAGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCTAAAGgtatgtattgctattggac-tggaggcttgtaaattgtgttttggctttaatccttttatcttttgcctttgcattcttcttcttttcaagaaaccaaatc
upper sequence: AT5G61500.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G00830.5 (Glycine max), 5'ss of exon 2
GCTGCTTCTGTGGCAGAGGATTATGAAGCTGCTGGAGGTGAAGTGTTGGTTGATGATGAAGATAATGATGGTTGGCTGGCTACACATGGGAAACCGAAAGgtacat----tttgtatt----tagagatttgtgcctctgaaattcacttatctcttattcaacttgtgtctt--gatttttggccatag----
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GCTGCATCTGTTGAAGAGGAATATGAAGCTGCTGGAGGGGAAGTTCTACTCGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAGgcatgtattatttgtattggactggaggcttgtatattgtgctttggctttaatcct-tttatcttatgcttttgcatttttcttcttctcaag
upper sequence: AT5G61500.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G00830.4 (Glycine max), 5'ss of exon 3
GCTGCTTCTGTGGCAGAGGATTATGAAGCTGCTGGAGGTGAAGTGTTGGTTGATGATGAAGATAATGATGGTTGGCTGGCTACACATGGGAAACCGAAAGgtacat----tttgtatt----tagagatttgtgcctctgaaattcacttatctcttattcaacttgtgtcttg--atttttggccatag----------------------------------------------------
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GCTGCATCTGTTGAAGAGGAATATGAAGCTGCTGGAGGGGAAGTTCTACTCGATGATGAAGATAATGATGGCTGGCTAGCAACTCATGGGAAACCCAAAGgcatgtattatttgtattggactggaggcttgtatattgtgctttggctttaatcct-tttatcttatgcttttgcatttttcttcttctcaagaaaccaaatctgatgaggatgagaatttaccttccatggaaagcctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164059527|gb|ES037388.1|ES037388EST: TGATGATGAAGATAATGATGGTTGGCTGGCTACACATGGGAAACCGAAGG ATAAAGGCAAGGAAGAGGATAACTTAC
genomic: TGATGATGAAGATAATGATGGTTGGCTGGCTACACATGGGAAACCGAAAGgtacattttg ... ttggccatagATAAAGGCAAGGAAGAGGATAACTTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGCTTCTGTGGCAGAGGATTATGAAGCTGCTGGAGGTGAAGTGTTGGTTGATGATGAAGATAATGATGGTTGGCTGGCTACACATGGGAAACCGAAAGgtacattttgtatttagagatttgtgcctctgaaattcacttatctcttattcaacttgtgtcttgatttttggccatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA