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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGACCTTAAAGACGACAAGAATGTTCCTGTTAGAACTCAGCAATGTGCGCCTTGTTGCGCAGGTTTCTTCTGCCCTCGTGGTATCACCTGCATGATCCgtaagttaacctcctttaaacattcagaaacgatgaaagattcggttgttgatccatttctaatgttgtttcctcactatgatgtgaag

Basic information

species Arabidopsis thaliana
transcript AT5G60740.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G60740.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G20220.1 (Glycine max), 5'ss of exon 1
GTTGACCTTAAAGACGACAAGAATGTTCCTGTTAGAACTCAGCAATGTGCGCCTTGTTGCGCAGGTTTCTTCTGCCCTCGTGGTATCACCTGCATGATCCgtaagttaacctcctttaaacattcagaaacgatgaaag----attcggttgttgatccatttcta-atgttgtttcctcactatgatgtgaag--------
|       ||   || | |||    | ||| | ||| |     | ||    |||||||| | ||| ||||| ||||||| |||| |||| ||||||||||||||||  |     | |  |||| ||  ||| || | |     | |  ||| ||  |   | |||  || ||    | ||| | |  ||||           
GACATTGGTAGTCACAAGAAGGGCATACCTATCAGATCCGTTGATTGCCAACCTTGTTGTGAAGGCTTCTTTTGCCCTCATGGTCTCACTTGCATGATCCgtaagt--attatttatgcacatacaagaacaatcacaacactaattagttttttttttctctctgtatttttgcccttcattgtcgtgtgctctacctact