1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGAATCCTGATGTTGCAAAGATGTTTCACCTTGATCCGGAGTCTAAAAGGCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGgttggttctctgtaaatctttgttatgcattgatttagtgatcttgttctttgggcttttgcttactatgtttgtgtttaatatgcag
species | Arabidopsis thaliana |
transcript | AT5G60640.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTG ATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGCEST: gi|86064531|gb|DR360288.1|DR360288
genomic: GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGgttggttctc ... taatatgcagATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC
EST: GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTG ATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGCEST: gi|124714276|gb|EH805678.1|EH805678
genomic: GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGgttggttctc ... taatatgcagATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC
EST: CTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTG ATGGAGAATTTGTEST: gi|86054030|gb|DR349787.1|DR349787
genomic: CTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGgttggttctc ... taatatgcagATGGAGAATTTGT
EST: GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTG ATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGCEST: gi|86064530|gb|DR360287.1|DR360287
genomic: GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGgttggttctc ... taatatgcagATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC
EST: GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTG ATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGCEST: gi|164105081|gb|ES057670.1|ES057670
genomic: GCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGgttggttctc ... taatatgcagATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC
EST: CTGTCTTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTG ATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC
genomic: CTG-C-TCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGgttggttctc ... taatatgcagATGGAGAATTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAATCCTGATGTTGCAAAGATGTTTCACCTTGATCCGGAGTCTAAAAGGCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGgttggttctctgtaaatctttgttatgcattgatttagtgatcttgttctttgggcttttgcttactatgtttgtgtttaatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA